Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.93■□□□□ 0.62
COL5A1P20908 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
COL5A1P20908 TSPY17P-201ENST00000450329 467 ntBASIC18.93■□□□□ 0.62
COL5A1P20908 Z85996.1-201ENST00000494644 937 ntBASIC18.93■□□□□ 0.62
COL5A1P20908 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.93■□□□□ 0.62
COL5A1P20908 AC008622.2-201ENST00000617006 1229 ntBASIC18.93■□□□□ 0.62
COL5A1P20908 AC116407.4-201ENST00000623319 1061 ntBASIC18.93■□□□□ 0.62
COL5A1P20908 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A1P20908 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
COL5A1P20908 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.92■□□□□ 0.62
COL5A1P20908 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A1P20908 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
COL5A1P20908 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.92■□□□□ 0.62
COL5A1P20908 AC009947.2-201ENST00000444014 672 ntBASIC18.92■□□□□ 0.62
COL5A1P20908 COX11P1-201ENST00000489116 835 ntBASIC18.92■□□□□ 0.62
COL5A1P20908 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.92■□□□□ 0.62
COL5A1P20908 AC141257.4-201ENST00000634557 245 ntBASIC18.92■□□□□ 0.62
COL5A1P20908 AC136944.6-201ENST00000634818 245 ntBASIC18.92■□□□□ 0.62
COL5A1P20908 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A1P20908 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A1P20908 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A1P20908 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A1P20908 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A1P20908 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
COL5A1P20908 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.91■□□□□ 0.62
COL5A1P20908 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.91■□□□□ 0.62
COL5A1P20908 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.91■□□□□ 0.62
COL5A1P20908 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.91■□□□□ 0.62
COL5A1P20908 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 CA15P1-201ENST00000481698 905 ntBASIC18.91■□□□□ 0.62
COL5A1P20908 AL121956.5-201ENST00000625261 221 ntBASIC18.91■□□□□ 0.62
COL5A1P20908 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.91■□□□□ 0.62
COL5A1P20908 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A1P20908 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.9■□□□□ 0.62
COL5A1P20908 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A1P20908 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A1P20908 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
COL5A1P20908 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.9■□□□□ 0.62
COL5A1P20908 AL359075.1-203ENST00000462729 1002 ntBASIC18.9■□□□□ 0.62
COL5A1P20908 AC139887.4-201ENST00000607877 719 ntBASIC18.9■□□□□ 0.62
COL5A1P20908 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.9■□□□□ 0.62
COL5A1P20908 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
COL5A1P20908 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.9■□□□□ 0.62
COL5A1P20908 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
COL5A1P20908 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.89■□□□□ 0.62
COL5A1P20908 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.89■□□□□ 0.62
COL5A1P20908 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
COL5A1P20908 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
COL5A1P20908 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A1P20908 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.89■□□□□ 0.61
COL5A1P20908 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
COL5A1P20908 TSPY5P-201ENST00000426936 936 ntBASIC18.89■□□□□ 0.61
COL5A1P20908 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A1P20908 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A1P20908 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A1P20908 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.89■□□□□ 0.61
COL5A1P20908 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A1P20908 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A1P20908 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 KRT8P8-201ENST00000434750 1448 ntBASIC18.89■□□□□ 0.61
COL5A1P20908 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.89■□□□□ 0.61
COL5A1P20908 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL5A1P20908 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.89■□□□□ 0.61
COL5A1P20908 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A1P20908 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A1P20908 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A1P20908 DUSP5P1-201ENST00000441325 1139 ntBASIC18.88■□□□□ 0.61
COL5A1P20908 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms