Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.83■□□□□ 0.44
SPTA1P02549 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SPTA1P02549 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.83■□□□□ 0.44
SPTA1P02549 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.83■□□□□ 0.44
SPTA1P02549 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.82■□□□□ 0.44
SPTA1P02549 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SPTA1P02549 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
SPTA1P02549 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
SPTA1P02549 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.82■□□□□ 0.44
SPTA1P02549 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.82■□□□□ 0.44
SPTA1P02549 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SPTA1P02549 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.82■□□□□ 0.44
SPTA1P02549 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.82■□□□□ 0.44
SPTA1P02549 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
SPTA1P02549 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SPTA1P02549 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.81■□□□□ 0.44
SPTA1P02549 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.81■□□□□ 0.44
SPTA1P02549 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SPTA1P02549 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SPTA1P02549 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.81■□□□□ 0.44
SPTA1P02549 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.81■□□□□ 0.44
SPTA1P02549 AC141257.4-201ENST00000634557 245 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 AC136944.6-201ENST00000634818 245 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 AC018553.1-201ENST00000616682 1458 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SPTA1P02549 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SPTA1P02549 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SPTA1P02549 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SPTA1P02549 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.81■□□□□ 0.44
SPTA1P02549 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.81■□□□□ 0.44
SPTA1P02549 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.81■□□□□ 0.44
SPTA1P02549 MIR3652-201ENST00000579335 131 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 AC083849.1-201ENST00000615227 514 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 AC011298.2-201ENST00000617989 482 ntBASIC17.81■□□□□ 0.44
SPTA1P02549 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.81■□□□□ 0.44
SPTA1P02549 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
SPTA1P02549 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.81■□□□□ 0.44
SPTA1P02549 AL121603.2-201ENST00000557373 2117 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SPTA1P02549 AL022342.1-201ENST00000400363 863 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SPTA1P02549 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 LINC02084-201ENST00000606069 1096 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 TSPY21P-201ENST00000433481 731 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 TSPY23P-201ENST00000440136 739 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 AL441883.1-201ENST00000566170 1045 ntBASIC17.8■□□□□ 0.44
SPTA1P02549 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
SPTA1P02549 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SPTA1P02549 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.79■□□□□ 0.44
SPTA1P02549 YBX1P10-201ENST00000444752 975 ntBASIC17.79■□□□□ 0.44
SPTA1P02549 FAAHP1-202ENST00000446499 1238 ntBASIC17.79■□□□□ 0.44
SPTA1P02549 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 AC117500.6-201ENST00000624871 588 ntBASIC17.79■□□□□ 0.44
SPTA1P02549 KRT8P20-201ENST00000423953 1409 ntBASIC17.79■□□□□ 0.44
SPTA1P02549 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.79■□□□□ 0.44
SPTA1P02549 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.79■□□□□ 0.44
SPTA1P02549 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.79■□□□□ 0.44
SPTA1P02549 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.79■□□□□ 0.44
SPTA1P02549 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.79■□□□□ 0.44
SPTA1P02549 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.79■□□□□ 0.44
SPTA1P02549 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.79■□□□□ 0.44
SPTA1P02549 AC131212.4-201ENST00000623606 975 ntBASIC17.79■□□□□ 0.44
SPTA1P02549 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.79■□□□□ 0.44
SPTA1P02549 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.79■□□□□ 0.44
SPTA1P02549 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SPTA1P02549 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SPTA1P02549 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.78■□□□□ 0.44
SPTA1P02549 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SPTA1P02549 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
SPTA1P02549 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SPTA1P02549 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.78■□□□□ 0.44
SPTA1P02549 AC009078.2-202ENST00000463353 338 ntBASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms