Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CLPTM1LP1-201ENST00000604519 484 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AL451086.1-201ENST00000605596 223 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AC004223.4-201ENST00000612426 332 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 HULC.1-201ENST00000612720 240 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AC048341.3-201ENST00000619323 491 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 CR392039.4-201ENST00000624968 501 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AC092111.1-201ENST00000618256 3358 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 EIF3EP1-201ENST00000433978 1316 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 AC093775.1-201ENST00000624154 1868 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 TMC3-AS1-206ENST00000612811 2726 ntBASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 POF1B-202ENST00000373145 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
TRAIPQ9BWF2 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 CUBNP3-201ENST00000457461 1784 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 OR5M2P-202ENST00000641241 4242 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL121949.2-201ENST00000403446 1548 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 LYARP1-201ENST00000436977 1501 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 OR10D1P-201ENST00000355343 936 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 RNU6-492P-201ENST00000363035 104 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL359715.1-201ENST00000404330 555 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 RNU2-18P-201ENST00000411224 162 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ZNF885P-201ENST00000420174 1098 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ISCA1P2-201ENST00000438679 421 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL356121.1-201ENST00000442911 156 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 GAPDHP16-201ENST00000448152 962 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC097262.1-201ENST00000452559 548 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC021074.2-201ENST00000468434 172 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 RN7SL705P-201ENST00000481678 294 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 SNRPCP11-201ENST00000492453 205 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 MINOS1P4-201ENST00000515470 318 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 TBCA-203ENST00000517679 545 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 IGLC4-201ENST00000517690 248 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC120036.3-201ENST00000517826 292 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AP001804.1-201ENST00000526868 919 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC018552.1-201ENST00000562099 811 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC103881.1-201ENST00000603476 538 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AL136981.2-201ENST00000617319 734 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 FP325313.1-201ENST00000638228 703 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC079178.2-201ENST00000439323 1624 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC134882.1-201ENST00000603738 1676 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 AC097461.1-201ENST00000568928 2821 ntBASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms