Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPL7P17-201ENST00000470927 724 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RN7SL314P-201ENST00000490735 292 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC026412.2-201ENST00000512270 1075 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC008549.1-201ENST00000512900 643 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC106800.2-201ENST00000514009 1103 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 EIF3KP3-201ENST00000514461 639 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC117383.2-201ENST00000514722 322 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 MYL6-211ENST00000548580 528 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RPS3AP4-201ENST00000555161 764 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC044860.3-201ENST00000559957 368 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC018558.5-201ENST00000565840 952 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TPRKBP2-201ENST00000565969 475 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC141257.3-201ENST00000572906 215 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC090236.2-201ENST00000587933 1101 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 NDUFA3P1-201ENST00000588007 252 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC116563.2-201ENST00000624751 535 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC093591.3-201ENST00000634516 308 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TCP11X1-202ENST00000622971 1372 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 WASF5P-205ENST00000428639 1455 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC007485.2-201ENST00000623493 1667 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SAMMSON-203ENST00000641005 2168 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ADAMTS9-AS2-202ENST00000474768 2388 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SIRPG-AS1-202ENST00000456177 2795 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TROVE2-205ENST00000367446 3081 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC025125.1-201ENST00000624743 1922 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 IQGAP1-201ENST00000268182 7233 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL080312.1-201ENST00000256654 824 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RNU6-251P-201ENST00000363235 104 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RNU5E-4P-201ENST00000364931 120 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RNY3P14-201ENST00000384309 102 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RNU6-297P-201ENST00000384636 107 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 CNN3P1-201ENST00000401596 935 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 RNU2-65P-201ENST00000410162 185 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 MTND4LP17-201ENST00000414607 293 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 USP9YP13-201ENST00000417797 480 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AIMP1P1-201ENST00000418670 937 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC233981.1-201ENST00000423224 461 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC140Q96MF4 ISCA1P1-201ENST00000426679 387 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 DPPA2P1-201ENST00000428060 556 ntBASIC5.73□□□□□ -1.49
CCDC140Q96MF4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms