Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 EEF1B2P5-201ENST00000444820 548 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AL353718.1-201ENST00000451028 517 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC011225.1-201ENST00000457751 369 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 HIGD1AP14-201ENST00000507617 282 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 OR5D2P-201ENST00000524390 911 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 CR383656.6-201ENST00000550518 394 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 QTRT1P1-201ENST00000604344 1078 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC005014.3-201ENST00000605985 190 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC093388.1-201ENST00000609166 430 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC007204.2-201ENST00000615022 616 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AC074276.2-201ENST00000619891 348 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 LINC00216-201ENST00000623548 1126 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 AP002371.2-201ENST00000624450 503 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 GUCY1B2-204ENST00000531898 1979 ntBASIC5.76□□□□□ -1.49
COL28A1Q2UY09 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.76□□□□□ -1.49
COL28A1Q2UY09 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC004656.1-201ENST00000568479 4951 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC005261.2-201ENST00000593427 4258 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 SNORA64.1-201ENST00000362600 132 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 CCNB2P1-201ENST00000399411 1150 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 NPM1P37-201ENST00000403105 874 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 TMA16P2-201ENST00000413187 601 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AL807761.1-201ENST00000417622 171 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 RPL35AP31-201ENST00000418340 337 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 CYP4F30P-202ENST00000420048 405 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 GAPDHP75-201ENST00000433910 943 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 STRADBP1-201ENST00000478954 1281 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC114728.1-201ENST00000488289 483 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 CEACAMP10-202ENST00000495431 496 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC138866.2-201ENST00000508650 584 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 GSTP1P1-201ENST00000548078 319 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 HMGN2P6-201ENST00000551091 273 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC008115.4-201ENST00000619780 775 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC080188.3-201ENST00000624842 748 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC006453.5-201ENST00000636451 619 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC011815.2-201ENST00000618230 2021 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL28A1Q2UY09 AC093671.1-201ENST00000624981 2929 ntBASIC5.75□□□□□ -1.49
COL28A1Q2UY09 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC027088.4-201ENST00000611559 1947 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms