Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC7.1□□□□□ -1.27
LIG3P49916 OR7E19P-202ENST00000589942 844 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 RBM11P1-201ENST00000604951 799 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC104184.1-201ENST00000607513 721 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC239868.4-201ENST00000608318 671 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC099676.1-201ENST00000608886 657 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC121761.2-201ENST00000617300 689 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC022509.4-201ENST00000621404 572 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AL590240.3-201ENST00000621416 943 ntBASIC7.1□□□□□ -1.27
LIG3P49916 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
LIG3P49916 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 SLC2A3P4-201ENST00000521259 1471 ntBASIC7.1□□□□□ -1.27
LIG3P49916 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC7.1□□□□□ -1.27
LIG3P49916 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
LIG3P49916 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 AC087359.1-201ENST00000508335 1740 ntBASIC7.1□□□□□ -1.27
LIG3P49916 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIG3P49916 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 AC013488.1-201ENST00000526618 1838 ntBASIC7.09□□□□□ -1.27
LIG3P49916 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
LIG3P49916 RNU6-560P-201ENST00000364007 108 ntBASIC7.09□□□□□ -1.27
LIG3P49916 Y_RNA.560-201ENST00000384689 102 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RNU1-56P-201ENST00000391303 164 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RN7SKP268-201ENST00000411107 316 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RNA5SP280-201ENST00000411230 115 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC245060.4-201ENST00000413293 1121 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RAD23BP2-201ENST00000416003 1207 ntBASIC7.09□□□□□ -1.27
LIG3P49916 TRBV24OR9-2-201ENST00000416632 435 ntBASIC7.09□□□□□ -1.27
LIG3P49916 OR6C64P-201ENST00000419708 825 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC006366.1-201ENST00000422002 759 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 AL139421.1-201ENST00000423010 169 ntBASIC7.09□□□□□ -1.27
LIG3P49916 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 AC012519.1-201ENST00000424588 610 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RPL21P43-201ENST00000425440 472 ntBASIC7.09□□□□□ -1.27
LIG3P49916 SNX19-202ENST00000426933 888 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 AC093716.1-201ENST00000435923 377 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 MTCYBP39-201ENST00000437562 491 ntBASIC7.09□□□□□ -1.27
LIG3P49916 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 AL591503.2-201ENST00000442314 1005 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC7.09□□□□□ -1.27
LIG3P49916 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 LINC01795-201ENST00000454367 813 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC7.09□□□□□ -1.27
LIG3P49916 AL354872.1-201ENST00000456361 967 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 HSPE1P22-201ENST00000456856 327 ntBASIC7.09□□□□□ -1.27
LIG3P49916 BX323845.2-201ENST00000458382 234 ntBASIC7.09□□□□□ -1.27
LIG3P49916 RPL34P34-201ENST00000465389 354 ntBASIC7.09□□□□□ -1.27
LIG3P49916 PSAT1P4-201ENST00000466500 526 ntBASIC7.09□□□□□ -1.27
LIG3P49916 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC7.09□□□□□ -1.27
LIG3P49916 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
LIG3P49916 RNU2-30P-201ENST00000516209 141 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC7.09□□□□□ -1.27
LIG3P49916 AC130366.1-201ENST00000526505 1192 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AP001804.1-201ENST00000526868 919 ntBASIC7.09□□□□□ -1.27
LIG3P49916 UBE2NP1-201ENST00000545592 458 ntBASIC7.09□□□□□ -1.27
LIG3P49916 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIG3P49916 FXNP1-201ENST00000555153 337 ntBASIC7.09□□□□□ -1.27
LIG3P49916 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.09□□□□□ -1.27
LIG3P49916 MTCO1P40-201ENST00000574371 625 ntBASIC7.09□□□□□ -1.27
LIG3P49916 MIR744-201ENST00000578242 98 ntBASIC7.09□□□□□ -1.27
LIG3P49916 MIR4801-201ENST00000582704 82 ntBASIC7.09□□□□□ -1.27
LIG3P49916 MIR5682-201ENST00000584864 76 ntBASIC7.09□□□□□ -1.27
LIG3P49916 Metazoa_SRP.57-201ENST00000597717 283 ntBASIC7.09□□□□□ -1.27
LIG3P49916 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC7.09□□□□□ -1.27
LIG3P49916 AP003465.2-201ENST00000602571 373 ntBASIC7.09□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms