Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 RPSAP51-201ENST00000497462 645 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC105384.2-201ENST00000508433 640 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 TMEM97P2-201ENST00000517841 403 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 OR5D2P-201ENST00000524390 911 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 IGBP1P1-201ENST00000554337 1009 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC096996.1-201ENST00000563813 325 ntBASIC5.29□□□□□ -1.56
SOX3P41225 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.29□□□□□ -1.56
SOX3P41225 AC245128.3-201ENST00000594721 748 ntBASIC5.29□□□□□ -1.56
SOX3P41225 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.29□□□□□ -1.56
SOX3P41225 AC004477.3-201ENST00000614061 590 ntBASIC5.29□□□□□ -1.56
SOX3P41225 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 AL390318.1-201ENST00000624564 687 ntBASIC5.29□□□□□ -1.56
SOX3P41225 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SOX3P41225 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.29□□□□□ -1.56
SOX3P41225 MRE11P1-201ENST00000464884 2127 ntBASIC5.29□□□□□ -1.56
SOX3P41225 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 AC139426.3-201ENST00000605648 2059 ntBASIC5.28□□□□□ -1.56
SOX3P41225 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 AL161912.4-201ENST00000623889 2468 ntBASIC5.28□□□□□ -1.56
SOX3P41225 MFSD8-239ENST00000641590 2479 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC083799.1-201ENST00000366451 910 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RPL11P3-201ENST00000395256 523 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RMRPP5-201ENST00000411156 267 ntBASIC5.28□□□□□ -1.56
SOX3P41225 NIFKP3-201ENST00000417799 865 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.28□□□□□ -1.56
SOX3P41225 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.28□□□□□ -1.56
SOX3P41225 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 Z84478.1-201ENST00000438230 1219 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RAD1P2-201ENST00000446414 663 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RPS23P9-201ENST00000448848 438 ntBASIC5.28□□□□□ -1.56
SOX3P41225 OR52Y1P-201ENST00000452418 828 ntBASIC5.28□□□□□ -1.56
SOX3P41225 OR2AF1P-201ENST00000454899 889 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 AC023141.9-201ENST00000458734 412 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RN7SL197P-201ENST00000466981 299 ntBASIC5.28□□□□□ -1.56
SOX3P41225 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC090602.1-201ENST00000469695 252 ntBASIC5.28□□□□□ -1.56
SOX3P41225 RN7SL570P-201ENST00000484405 292 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.28□□□□□ -1.56
SOX3P41225 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 MRPS16P1-201ENST00000523462 412 ntBASIC5.28□□□□□ -1.56
SOX3P41225 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 AL121594.2-201ENST00000541658 472 ntBASIC5.28□□□□□ -1.56
SOX3P41225 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.28□□□□□ -1.56
SOX3P41225 AC022404.1-201ENST00000555320 273 ntBASIC5.28□□□□□ -1.56
SOX3P41225 DPPA3P2-202ENST00000557188 1219 ntBASIC5.28□□□□□ -1.56
SOX3P41225 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.28□□□□□ -1.56
SOX3P41225 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.28□□□□□ -1.56
SOX3P41225 SNORD95-201ENST00000579879 68 ntBASIC5.28□□□□□ -1.56
SOX3P41225 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 SRRM1P3-201ENST00000426911 2678 ntBASIC5.28□□□□□ -1.56
SOX3P41225 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
SOX3P41225 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.28□□□□□ -1.56
SOX3P41225 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SOX3P41225 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SOX3P41225 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SOX3P41225 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms