Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CLK4-214ENST00000611575 1206 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 MIR7854-201ENST00000620068 65 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 Z69908.1-201ENST00000622603 247 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 AC114546.4-201ENST00000624413 369 ntBASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
CCDC39Q9UFE4 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC074141.1-201ENST00000588129 2995 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 RNA5SP231-201ENST00000410496 138 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MTCO1P17-201ENST00000411522 491 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC124944.2-201ENST00000429866 1242 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC084290.1-201ENST00000434995 374 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MTND5P2-201ENST00000442927 1142 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC009961.3-201ENST00000449832 765 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 SLAMF6P1-201ENST00000451067 602 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 RN7SKP198-201ENST00000459286 306 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PPP1R11P1-201ENST00000486095 376 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC113420.1-201ENST00000507903 571 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 RNU6-1129P-201ENST00000515964 104 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 RNU6-720P-201ENST00000516363 108 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC089984.3-201ENST00000552838 363 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 GNG2-203ENST00000553432 577 ntTSL 4 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 OR7E19P-202ENST00000589942 844 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AF131215.7-201ENST00000602443 707 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AL157899.1-201ENST00000604110 936 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC116651.1-201ENST00000609724 556 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC027559.1-201ENST00000636288 271 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 OR11H2-202ENST00000641517 1085 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 ZNF101P1-201ENST00000435701 1720 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC012020.1-201ENST00000624541 1728 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC010624.4-201ENST00000597606 1351 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AC009220.2-201ENST00000489759 1751 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 AL157831.2-201ENST00000564681 3095 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 ZNF876P-202ENST00000398732 1485 ntBASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
CCDC39Q9UFE4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 ATP5A1P4-201ENST00000556888 1605 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 OR5H15-201ENST00000383696 930 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 RNU11-201ENST00000387069 134 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL355615.1-201ENST00000406187 641 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 AL590635.1-201ENST00000406314 586 ntBASIC7.42□□□□□ -1.22
CCDC39Q9UFE4 FCF1P9-201ENST00000412546 282 ntBASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms