Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC090589.1-201ENST00000473109 362 ntBASIC5.23□□□□□ -1.57
LIM2P55344 AC104109.1-201ENST00000498563 436 ntBASIC5.23□□□□□ -1.57
LIM2P55344 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.23□□□□□ -1.57
LIM2P55344 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.23□□□□□ -1.57
LIM2P55344 IGKV3D-34-201ENST00000522638 302 ntBASIC5.23□□□□□ -1.57
LIM2P55344 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.23□□□□□ -1.57
LIM2P55344 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.23□□□□□ -1.57
LIM2P55344 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.23□□□□□ -1.57
LIM2P55344 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.23□□□□□ -1.57
LIM2P55344 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.23□□□□□ -1.57
LIM2P55344 AC104695.2-201ENST00000605056 775 ntBASIC5.23□□□□□ -1.57
LIM2P55344 AC087821.1-201ENST00000623639 567 ntBASIC5.23□□□□□ -1.57
LIM2P55344 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.23□□□□□ -1.57
LIM2P55344 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.23□□□□□ -1.57
LIM2P55344 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
LIM2P55344 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIM2P55344 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIM2P55344 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIM2P55344 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
LIM2P55344 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 MIR133A2-201ENST00000347538 102 ntBASIC5.22□□□□□ -1.57
LIM2P55344 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 U3.28-201ENST00000391249 210 ntBASIC5.22□□□□□ -1.57
LIM2P55344 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.22□□□□□ -1.57
LIM2P55344 AL355994.1-201ENST00000424379 260 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 AC009784.1-201ENST00000426484 460 ntBASIC5.22□□□□□ -1.57
LIM2P55344 NFYAP1-201ENST00000431953 972 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.22□□□□□ -1.57
LIM2P55344 AL390119.1-201ENST00000440329 312 ntBASIC5.22□□□□□ -1.57
LIM2P55344 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
LIM2P55344 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 RPL5P16-201ENST00000471467 790 ntBASIC5.22□□□□□ -1.57
LIM2P55344 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 RN7SL717P-201ENST00000478343 297 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AC105420.1-201ENST00000504389 582 ntBASIC5.22□□□□□ -1.57
LIM2P55344 SEPT10P1-201ENST00000517342 1162 ntBASIC5.22□□□□□ -1.57
LIM2P55344 OR4A17P-201ENST00000526032 904 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.22□□□□□ -1.57
LIM2P55344 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.22□□□□□ -1.57
LIM2P55344 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 AL118522.2-201ENST00000616045 615 ntBASIC5.22□□□□□ -1.57
LIM2P55344 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AC132068.1-201ENST00000623805 459 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AC021766.1-201ENST00000624404 741 ntBASIC5.22□□□□□ -1.57
LIM2P55344 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
LIM2P55344 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
LIM2P55344 AP001029.2-203ENST00000589795 4910 ntBASIC5.22□□□□□ -1.57
LIM2P55344 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
LIM2P55344 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.22□□□□□ -1.57
LIM2P55344 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.22□□□□□ -1.57
LIM2P55344 AL360270.2-201ENST00000562952 5985 ntBASIC5.22□□□□□ -1.57
LIM2P55344 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.57
LIM2P55344 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
LIM2P55344 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
LIM2P55344 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LIM2P55344 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.21□□□□□ -1.57
LIM2P55344 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
LIM2P55344 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
LIM2P55344 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.21□□□□□ -1.58
LIM2P55344 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
LIM2P55344 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 RN7SKP69-201ENST00000365390 305 ntBASIC5.21□□□□□ -1.58
LIM2P55344 RN7SKP81-201ENST00000365603 331 ntBASIC5.21□□□□□ -1.58
LIM2P55344 RNU6-167P-201ENST00000384292 106 ntBASIC5.21□□□□□ -1.58
LIM2P55344 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
LIM2P55344 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.21□□□□□ -1.58
LIM2P55344 AL359265.1-201ENST00000440296 795 ntBASIC5.21□□□□□ -1.58
LIM2P55344 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 AL358876.1-201ENST00000453364 1075 ntBASIC5.21□□□□□ -1.58
LIM2P55344 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.21□□□□□ -1.58
LIM2P55344 AC023141.9-201ENST00000458734 412 ntBASIC5.21□□□□□ -1.58
LIM2P55344 PSAT1P4-201ENST00000466500 526 ntBASIC5.21□□□□□ -1.58
LIM2P55344 SNRPCP3-201ENST00000474888 476 ntBASIC5.21□□□□□ -1.58
LIM2P55344 RN7SL466P-201ENST00000497546 295 ntBASIC5.21□□□□□ -1.58
LIM2P55344 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.21□□□□□ -1.58
LIM2P55344 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.21□□□□□ -1.58
LIM2P55344 IGLVIV-64-201ENST00000518581 301 ntBASIC5.21□□□□□ -1.58
LIM2P55344 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms