Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 RNGTTP1-201ENST00000420965 728 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 GPN3P1-201ENST00000423883 535 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 RPL23AP4-201ENST00000427757 463 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 MTCYBP12-201ENST00000440559 1134 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AL663074.2-201ENST00000440621 479 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 RNU1-88P-201ENST00000459274 128 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AC022730.1-201ENST00000473114 568 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 MTCO1P31-201ENST00000506355 492 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 GAPDHP62-201ENST00000515313 990 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 MTND5P21-201ENST00000531961 522 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC126365.2-201ENST00000580630 379 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AC026898.1-201ENST00000586404 571 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 AL450270.1-201ENST00000606160 391 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 AL135786.2-201ENST00000608422 615 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 MIR6133-201ENST00000617057 108 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 MIR6503-201ENST00000622884 86 ntBASIC4.8□□□□□ -1.64
NKX2-1P43699 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX2-1P43699 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.8□□□□□ -1.64
NKX2-1P43699 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX2-1P43699 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX2-1P43699 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NKX2-1P43699 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
NKX2-1P43699 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX2-1P43699 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 OR9K1P-202ENST00000641111 3217 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 RNA5SP187-201ENST00000384400 119 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 RNA5SP156-201ENST00000410250 110 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AL096829.1-201ENST00000413677 457 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC079809.1-201ENST00000415468 276 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 AP006748.1-201ENST00000418874 346 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX2-1P43699 MTND2P9-201ENST00000422293 931 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC006065.1-201ENST00000422539 802 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC013410.2-201ENST00000422627 201 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 VN1R21P-201ENST00000426703 765 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC099677.3-201ENST00000427081 395 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX2-1P43699 FTO-202ENST00000431610 707 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 RPS19P6-201ENST00000441327 433 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 HMGN1P32-201ENST00000441744 256 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 GAPDHP37-201ENST00000442317 968 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC023512.1-201ENST00000444513 499 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 RPS23P9-201ENST00000448848 438 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC016027.4-201ENST00000450866 277 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX2-1P43699 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX2-1P43699 AC006539.1-201ENST00000481419 501 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 RPL38P3-201ENST00000484463 213 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 NPM1P28-201ENST00000492269 840 ntBASIC4.79□□□□□ -1.64
NKX2-1P43699 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms