Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 RPL31P15-201ENST00000449770 338 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 PPIAP20-201ENST00000449839 135 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AP006222.1-205ENST00000450734 457 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC018638.3-201ENST00000461273 132 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 RPSAP37-201ENST00000470913 821 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC073610.1-201ENST00000489971 396 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC009120.1-201ENST00000493458 473 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 RPSAP51-201ENST00000497462 645 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 MTATP6P1-201ENST00000514057 681 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 SCARNA6.1-201ENST00000516989 238 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 IGLV3-24-201ENST00000517477 197 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC022826.1-201ENST00000519383 805 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 HSPE1P2-201ENST00000554777 306 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AL356801.1-201ENST00000559320 294 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 NANOGP3-201ENST00000605855 286 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC007786.3-201ENST00000615154 596 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC022919.1-201ENST00000624979 626 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC073869.7-201ENST00000640874 297 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 UOX-205ENST00000640983 544 ntTSL 4 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC002525.1-201ENST00000624392 1622 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 NEPNP-201ENST00000404786 1371 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC008079.2-201ENST00000623543 20396 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 RPS2P45-201ENST00000469997 2057 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 MIR1203-201ENST00000408812 85 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC245060.4-201ENST00000413293 1121 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 EEF1B2P8-201ENST00000414101 671 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 NAP1L4P2-201ENST00000425958 899 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 RPL23AP19-201ENST00000436229 369 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AL359265.1-201ENST00000440296 795 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC011476.1-201ENST00000466725 307 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC007998.1-201ENST00000474156 672 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 RN7SKP253-201ENST00000516424 309 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC021678.3-201ENST00000517893 476 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 IGKV3D-34-201ENST00000522638 302 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 MIR3614-201ENST00000581261 86 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AL512356.3-201ENST00000623005 461 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 OR4F13P-202ENST00000560066 2054 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 AC007842.1-201ENST00000597336 2039 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 NR1H5P-201ENST00000452683 1377 ntBASIC4.26□□□□□ -1.73
HLA-DMBP28068 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HLA-DMBP28068 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms