Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC093663.2-201ENST00000484625 313 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC106800.3-201ENST00000511389 308 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 SUMO2P19-201ENST00000518920 295 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC118942.1-201ENST00000529674 1035 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL6A1P12109 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 AC027026.1-201ENST00000532323 742 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 EMP1-206ENST00000537612 505 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC6.89□□□□□ -1.31
COL6A1P12109 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.89□□□□□ -1.31
COL6A1P12109 SNORD39.2-201ENST00000579995 76 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 AL359704.2-201ENST00000604335 521 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AL136131.3-201ENST00000607600 188 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC112503.1-201ENST00000608436 391 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AC092954.1-201ENST00000609121 445 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 MIR7159-201ENST00000620587 66 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 AL450226.2-201ENST00000622913 439 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC235565.1-201ENST00000456962 1325 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 NEPNP-201ENST00000404786 1371 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 WDR95P-201ENST00000425638 1542 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 AC007342.5-201ENST00000571340 2142 ntBASIC6.89□□□□□ -1.31
COL6A1P12109 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL6A1P12109 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.89□□□□□ -1.31
COL6A1P12109 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL6A1P12109 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.89□□□□□ -1.31
COL6A1P12109 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
COL6A1P12109 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.88□□□□□ -1.31
COL6A1P12109 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 NCOA4P3-201ENST00000513203 1877 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 AC011416.1-201ENST00000514947 1732 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.88□□□□□ -1.31
COL6A1P12109 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 NEK2P2-201ENST00000438441 1338 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 SNORA64.1-201ENST00000362600 132 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 RNU1-19P-201ENST00000363306 165 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 RNU6-792P-201ENST00000363490 107 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
COL6A1P12109 RPL34P3-201ENST00000421454 338 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 AC002504.1-201ENST00000438281 691 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 GEMIN2P1-201ENST00000454246 752 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.88□□□□□ -1.31
COL6A1P12109 PFN1P6-201ENST00000476786 399 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 RPS23P1-201ENST00000491662 432 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC010343.2-201ENST00000510162 224 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
COL6A1P12109 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 RNU6-311P-201ENST00000516224 102 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 IGKV1D-22-201ENST00000518953 324 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 WBP1LP3-201ENST00000523033 208 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 IGLV3-6-201ENST00000523937 250 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 OSBPL9P5-201ENST00000542581 171 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.88□□□□□ -1.31
COL6A1P12109 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC044860.2-201ENST00000561005 179 ntBASIC6.88□□□□□ -1.31
COL6A1P12109 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC6.88□□□□□ -1.31
COL6A1P12109 LGI1-209ENST00000627699 664 ntTSL 3 BASIC6.88□□□□□ -1.31
COL6A1P12109 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms