Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7.09□□□□□ -1.27
COL3A1P02461 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL3A1P02461 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC7.09□□□□□ -1.27
COL3A1P02461 MSL3P1-202ENST00000440028 1468 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL3A1P02461 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL3A1P02461 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL3A1P02461 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
COL3A1P02461 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL3A1P02461 NIPA2P1-201ENST00000426223 976 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 AC009784.1-201ENST00000426484 460 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC7.09□□□□□ -1.27
COL3A1P02461 UBE2V2P4-201ENST00000447495 259 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC7.09□□□□□ -1.27
COL3A1P02461 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC7.09□□□□□ -1.27
COL3A1P02461 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.09□□□□□ -1.27
COL3A1P02461 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC7.09□□□□□ -1.27
COL3A1P02461 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC7.09□□□□□ -1.27
COL3A1P02461 AC079064.1-201ENST00000528365 362 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 AC134349.2-201ENST00000535136 910 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 HAUS8P1-201ENST00000549005 542 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC7.09□□□□□ -1.27
COL3A1P02461 PRELID3BP3-201ENST00000584963 545 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC7.09□□□□□ -1.27
COL3A1P02461 AP005131.7-201ENST00000610087 611 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 WWOX-217ENST00000620008 450 ntTSL 2 BASIC7.09□□□□□ -1.27
COL3A1P02461 SAMMSON-227ENST00000642114 1199 ntBASIC7.09□□□□□ -1.27
COL3A1P02461 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL3A1P02461 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC7.09□□□□□ -1.28
COL3A1P02461 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL3A1P02461 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC7.08□□□□□ -1.28
COL3A1P02461 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC7.08□□□□□ -1.28
COL3A1P02461 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.08□□□□□ -1.28
COL3A1P02461 AC017099.1-201ENST00000448261 1028 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 AC079168.1-201ENST00000458741 345 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC7.08□□□□□ -1.28
COL3A1P02461 AC090114.3-201ENST00000479267 829 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 AC093827.1-201ENST00000480094 861 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 RN7SL30P-201ENST00000488416 306 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC7.08□□□□□ -1.28
COL3A1P02461 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC7.08□□□□□ -1.28
COL3A1P02461 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 AC068870.2-201ENST00000620635 389 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 AC099654.6-201ENST00000636487 512 ntBASIC7.08□□□□□ -1.28
COL3A1P02461 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC7.08□□□□□ -1.28
COL3A1P02461 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
COL3A1P02461 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL3A1P02461 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC7.08□□□□□ -1.28
COL3A1P02461 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC7.08□□□□□ -1.28
COL3A1P02461 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL3A1P02461 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.07□□□□□ -1.28
COL3A1P02461 AC079753.1-201ENST00000623243 3868 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC7.07□□□□□ -1.28
COL3A1P02461 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 SNORA17.1-201ENST00000362945 126 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 SPTLC1P2-201ENST00000407089 121 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 U3.36-201ENST00000408418 213 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 RNU4-34P-201ENST00000410431 124 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AL133482.1-201ENST00000415988 498 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.07□□□□□ -1.28
COL3A1P02461 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC7.07□□□□□ -1.28
COL3A1P02461 AC090804.1-201ENST00000448870 490 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC7.07□□□□□ -1.28
COL3A1P02461 Z92846.1-201ENST00000456203 268 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 IGBP1P4-201ENST00000503202 879 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC7.07□□□□□ -1.28
COL3A1P02461 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC7.07□□□□□ -1.28
COL3A1P02461 AL390726.5-202ENST00000564800 256 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AL627230.1-201ENST00000613077 211 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AL591926.8-201ENST00000616876 211 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 AC048344.4-201ENST00000619744 527 ntBASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms