Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC073575.2-201ENST00000614212 627 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 AC011933.2-201ENST00000578539 2790 ntBASIC6.97□□□□□ -1.29
SHANK3Q9BYB0 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 NXF4-202ENST00000416098 1465 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 FAM3C2-201ENST00000312214 681 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AC092651.1-201ENST00000426110 312 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AC109464.1-201ENST00000511091 819 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 OR7H2P-201ENST00000513483 306 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 H3F3BP2-201ENST00000583907 357 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AL513327.3-201ENST00000602618 469 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 AC009237.13-201ENST00000603193 276 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 MIR92B-201ENST00000607575 96 ntBASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
SHANK3Q9BYB0 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC009237.10-201ENST00000414112 510 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC009237.5-201ENST00000414271 501 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC009127.1-201ENST00000467090 155 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC034236.1-201ENST00000469891 373 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC023818.1-201ENST00000498379 384 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 AC103792.1-201ENST00000603591 919 ntBASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SHANK3Q9BYB0 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AC007996.1-201ENST00000620414 2821 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AL009179.1-201ENST00000406085 265 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 RNGTTP1-201ENST00000420965 728 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 DNAJC19P7-201ENST00000428811 344 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AC012512.1-201ENST00000446594 718 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 IGBP1P3-201ENST00000447449 1000 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 RPL31P44-201ENST00000447680 377 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 AL356752.1-201ENST00000615844 593 ntBASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
SHANK3Q9BYB0 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 MIR1193-201ENST00000408109 78 ntBASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 RIMKLBP2-201ENST00000424737 654 ntBASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 snoU13.20-201ENST00000459180 104 ntBASIC6.94□□□□□ -1.3
SHANK3Q9BYB0 AC034205.1-201ENST00000520621 638 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms