Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
SCAPERQ9BY12 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 GAPDHP25-201ENST00000447061 1001 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC096741.1-201ENST00000472250 846 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 TOMM22P4-201ENST00000511318 336 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC209154.1-201ENST00000582156 337 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC093799.2-201ENST00000610062 578 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC099494.2-201ENST00000623371 978 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 AC112694.2-201ENST00000623697 768 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 SNX18P3-202ENST00000565670 1750 ntBASIC8.25□□□□□ -1.09
SCAPERQ9BY12 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
SCAPERQ9BY12 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AL669831.5-218ENST00000591702 1873 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AL353625.1-202ENST00000366273 571 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 HNRNPDLP2-201ENST00000455248 751 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 RN7SL205P-201ENST00000490174 284 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 RPS4XP20-201ENST00000505751 772 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 EIF3KP3-201ENST00000514461 639 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC078899.1-201ENST00000521432 1185 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 RN7SL52P-201ENST00000584271 284 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC006115.2-201ENST00000596823 202 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 RN7SL722P-201ENST00000617780 284 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 RN7SL565P-201ENST00000618246 284 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AP000346.3-201ENST00000622821 210 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 AC010480.1-201ENST00000624823 684 ntBASIC8.24□□□□□ -1.09
SCAPERQ9BY12 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
SCAPERQ9BY12 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AL356967.1-201ENST00000406305 431 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AL138878.2-201ENST00000440581 1241 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AL451063.1-201ENST00000450164 1133 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 Z92846.1-201ENST00000456203 268 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AP002373.2-201ENST00000541631 1060 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 NANOGP3-201ENST00000605855 286 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 AC091905.4-201ENST00000623432 202 ntBASIC8.23□□□□□ -1.09
SCAPERQ9BY12 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC8.23□□□□□ -1.09
SCAPERQ9BY12 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AC126755.2-208ENST00000327792 462 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AC138969.1-213ENST00000331436 462 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AL451142.1-201ENST00000375867 775 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AL078599.1-201ENST00000402075 293 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 COX6B1P1-201ENST00000415962 213 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 MEMO1P4-201ENST00000453590 386 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AL445687.2-201ENST00000458156 728 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 snoU13.20-201ENST00000459180 104 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 TRBV5-2-201ENST00000489095 273 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 RAB9BP1-201ENST00000519581 626 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AC134349.2-201ENST00000535136 910 ntBASIC8.22□□□□□ -1.09
SCAPERQ9BY12 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC8.22□□□□□ -1.09
SCAPERQ9BY12 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms