Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AL390318.1-201ENST00000624564 687 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 ICE2P1-201ENST00000512800 1849 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 RNA5SP131-201ENST00000365452 119 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 RNU1-136P-201ENST00000384181 164 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 SNORA17A-201ENST00000391185 133 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 OR2AT2P-201ENST00000413438 905 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 GNG5P5-201ENST00000420444 220 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AL389925.1-201ENST00000432257 728 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC005297.1-201ENST00000444765 862 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 RPS27AP2-201ENST00000457576 465 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 RN7SL273P-201ENST00000481561 299 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 OR2A3P-201ENST00000493774 953 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 RN7SL284P-201ENST00000498823 275 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 SNORA43.3-201ENST00000517240 103 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 HSPE1P2-201ENST00000554777 306 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 ADAM3B-201ENST00000569937 840 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC022960.2-201ENST00000616300 666 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 SNORA17.5-201ENST00000630429 132 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 AC103703.1-201ENST00000634783 663 ntBASIC5.63□□□□□ -1.51
VPS35Q96QK1 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS35Q96QK1 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS35Q96QK1 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 METTL15P3-201ENST00000415522 1221 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AL662874.1-201ENST00000426065 230 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 Z84478.1-201ENST00000438230 1219 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC002504.1-201ENST00000438281 691 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AL161636.2-201ENST00000445179 927 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 RN7SL72P-201ENST00000460697 269 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS35Q96QK1 GOLGA5P1-201ENST00000507317 980 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 ST13P12-201ENST00000508958 1094 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 MTATP6P1-201ENST00000514057 681 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 TMEM97P2-201ENST00000517841 403 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 NRBF2P4-201ENST00000520874 850 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC022616.2-201ENST00000523185 300 ntBASIC5.62□□□□□ -1.51
VPS35Q96QK1 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS35Q96QK1 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms