Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSH6P52701 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSH6P52701 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSH6P52701 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.69□□□□□ -1.18
MSH6P52701 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
MSH6P52701 AL353625.1-202ENST00000366273 571 ntBASIC7.69□□□□□ -1.18
MSH6P52701 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.69□□□□□ -1.18
MSH6P52701 RN7SKP151-201ENST00000410230 316 ntBASIC7.69□□□□□ -1.18
MSH6P52701 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC7.69□□□□□ -1.18
MSH6P52701 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC7.69□□□□□ -1.18
MSH6P52701 EDDM3DP-201ENST00000554692 434 ntBASIC7.69□□□□□ -1.18
MSH6P52701 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.69□□□□□ -1.18
MSH6P52701 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC7.69□□□□□ -1.18
MSH6P52701 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.69□□□□□ -1.18
MSH6P52701 AC012414.7-202ENST00000622705 1090 ntBASIC7.69□□□□□ -1.18
MSH6P52701 MFSD8-216ENST00000641147 4009 ntBASIC7.69□□□□□ -1.18
MSH6P52701 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSH6P52701 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
MSH6P52701 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSH6P52701 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSH6P52701 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
MSH6P52701 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7.68□□□□□ -1.18
MSH6P52701 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.68□□□□□ -1.18
MSH6P52701 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC7.68□□□□□ -1.18
MSH6P52701 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.68□□□□□ -1.18
MSH6P52701 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.68□□□□□ -1.18
MSH6P52701 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
MSH6P52701 SNORA16A-201ENST00000384342 137 ntBASIC7.68□□□□□ -1.18
MSH6P52701 COX6B1P1-201ENST00000415962 213 ntBASIC7.68□□□□□ -1.18
MSH6P52701 RPL23AP18-201ENST00000416139 468 ntBASIC7.68□□□□□ -1.18
MSH6P52701 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC7.68□□□□□ -1.18
MSH6P52701 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSH6P52701 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC7.68□□□□□ -1.18
MSH6P52701 AC096775.1-201ENST00000437724 448 ntBASIC7.68□□□□□ -1.18
MSH6P52701 snoU13.20-201ENST00000459180 104 ntBASIC7.68□□□□□ -1.18
MSH6P52701 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
MSH6P52701 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC7.68□□□□□ -1.18
MSH6P52701 EIF3KP3-201ENST00000514461 639 ntBASIC7.68□□□□□ -1.18
MSH6P52701 AC090424.1-201ENST00000535243 736 ntBASIC7.68□□□□□ -1.18
MSH6P52701 AC068790.4-201ENST00000602474 263 ntBASIC7.68□□□□□ -1.18
MSH6P52701 AC083809.1-201ENST00000615051 472 ntBASIC7.68□□□□□ -1.18
MSH6P52701 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
MSH6P52701 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.68□□□□□ -1.18
MSH6P52701 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 HSPD1P8-201ENST00000400121 1658 ntBASIC7.67□□□□□ -1.18
MSH6P52701 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 AC009831.5-201ENST00000624000 3189 ntBASIC7.67□□□□□ -1.18
MSH6P52701 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 AL731534.1-201ENST00000434711 269 ntBASIC7.67□□□□□ -1.18
MSH6P52701 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 PRPF38AP2-201ENST00000438179 851 ntBASIC7.67□□□□□ -1.18
MSH6P52701 AL161722.1-201ENST00000446972 1032 ntBASIC7.67□□□□□ -1.18
MSH6P52701 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 RPL37AP8-201ENST00000494116 276 ntBASIC7.67□□□□□ -1.18
MSH6P52701 HPRT1P1-201ENST00000509498 657 ntBASIC7.67□□□□□ -1.18
MSH6P52701 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC7.67□□□□□ -1.18
MSH6P52701 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 AC060766.1-201ENST00000590824 627 ntBASIC7.67□□□□□ -1.18
MSH6P52701 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC7.67□□□□□ -1.18
MSH6P52701 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.67□□□□□ -1.18
MSH6P52701 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSH6P52701 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.67□□□□□ -1.18
MSH6P52701 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.66□□□□□ -1.18
MSH6P52701 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC7.66□□□□□ -1.18
MSH6P52701 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.66□□□□□ -1.18
MSH6P52701 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 AL162456.1-201ENST00000634535 2006 ntBASIC7.66□□□□□ -1.18
MSH6P52701 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 AC126755.2-208ENST00000327792 462 ntBASIC7.66□□□□□ -1.18
MSH6P52701 AC138969.1-213ENST00000331436 462 ntBASIC7.66□□□□□ -1.18
MSH6P52701 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC7.66□□□□□ -1.18
MSH6P52701 RNU6-398P-201ENST00000384143 109 ntBASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms