Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 AC011933.2-201ENST00000578539 2790 ntBASIC8.97□□□□□ -0.97
CUX1P39880 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 AC007996.1-201ENST00000620414 2821 ntBASIC8.97□□□□□ -0.97
CUX1P39880 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
CUX1P39880 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC8.97□□□□□ -0.97
CUX1P39880 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC8.97□□□□□ -0.97
CUX1P39880 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC8.97□□□□□ -0.97
CUX1P39880 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC8.97□□□□□ -0.97
CUX1P39880 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC8.97□□□□□ -0.97
CUX1P39880 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 SPATA31C1-201ENST00000420021 3895 ntBASIC8.97□□□□□ -0.97
CUX1P39880 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
CUX1P39880 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC8.97□□□□□ -0.97
CUX1P39880 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC8.97□□□□□ -0.97
CUX1P39880 NXF4-202ENST00000416098 1465 ntBASIC8.97□□□□□ -0.97
CUX1P39880 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC8.97□□□□□ -0.97
CUX1P39880 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
CUX1P39880 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 CAST-202ENST00000325674 3356 ntTSL 5 BASIC8.96□□□□□ -0.97
CUX1P39880 SNORD56.6-201ENST00000384569 71 ntBASIC8.96□□□□□ -0.97
CUX1P39880 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC8.96□□□□□ -0.97
CUX1P39880 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC8.96□□□□□ -0.97
CUX1P39880 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
CUX1P39880 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC8.96□□□□□ -0.97
CUX1P39880 AC009597.2-201ENST00000604659 592 ntBASIC8.96□□□□□ -0.97
CUX1P39880 NAA60-237ENST00000615865 326 ntTSL 5 BASIC8.96□□□□□ -0.97
CUX1P39880 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC8.96□□□□□ -0.97
CUX1P39880 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC8.96□□□□□ -0.97
CUX1P39880 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
CUX1P39880 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC8.96□□□□□ -0.98
CUX1P39880 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC8.96□□□□□ -0.98
CUX1P39880 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC8.96□□□□□ -0.98
CUX1P39880 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC8.96□□□□□ -0.98
CUX1P39880 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.98
CUX1P39880 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC8.96□□□□□ -0.98
CUX1P39880 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
CUX1P39880 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC8.96□□□□□ -0.98
CUX1P39880 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC8.96□□□□□ -0.98
CUX1P39880 RNU6-398P-201ENST00000384143 109 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AC140479.2-201ENST00000421567 3130 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC8.95□□□□□ -0.98
CUX1P39880 ZDHHC20P1-204ENST00000435787 423 ntBASIC8.95□□□□□ -0.98
CUX1P39880 KNOP1P3-201ENST00000446933 426 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC8.95□□□□□ -0.98
CUX1P39880 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC8.95□□□□□ -0.98
CUX1P39880 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC8.95□□□□□ -0.98
CUX1P39880 AC008814.1-201ENST00000603797 406 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AC018765.1-201ENST00000623357 3446 ntBASIC8.95□□□□□ -0.98
CUX1P39880 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
CUX1P39880 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
CUX1P39880 RNU1-32P-201ENST00000363937 159 ntBASIC8.95□□□□□ -0.98
CUX1P39880 RNA5SP455-201ENST00000365190 119 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AL133482.1-201ENST00000415988 498 ntBASIC8.95□□□□□ -0.98
CUX1P39880 PDCL3P4-201ENST00000489621 720 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC8.95□□□□□ -0.98
CUX1P39880 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC8.95□□□□□ -0.98
CUX1P39880 AC008033.2-201ENST00000542626 177 ntBASIC8.95□□□□□ -0.98
CUX1P39880 AP005131.7-201ENST00000610087 611 ntBASIC8.95□□□□□ -0.98
CUX1P39880 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC8.95□□□□□ -0.98
CUX1P39880 LRRC37A16P-202ENST00000586022 3725 ntBASIC8.95□□□□□ -0.98
CUX1P39880 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC8.94□□□□□ -0.98
CUX1P39880 ALB-220ENST00000621628 1606 ntTSL 5 BASIC8.94□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms