Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.51□□□□□ -1.37
SCN4AP35499 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.51□□□□□ -1.37
SCN4AP35499 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.51□□□□□ -1.37
SCN4AP35499 P2RY10P2-201ENST00000416730 913 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
SCN4AP35499 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.51□□□□□ -1.37
SCN4AP35499 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.51□□□□□ -1.37
SCN4AP35499 AC007537.2-201ENST00000472093 511 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 RPL23AP72-201ENST00000492447 435 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.51□□□□□ -1.37
SCN4AP35499 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.51□□□□□ -1.37
SCN4AP35499 OR7H2P-201ENST00000513483 306 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 SCARNA16.4-201ENST00000516956 187 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.51□□□□□ -1.37
SCN4AP35499 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.51□□□□□ -1.37
SCN4AP35499 AL031320.1-201ENST00000604177 357 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.51□□□□□ -1.37
SCN4AP35499 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.51□□□□□ -1.37
SCN4AP35499 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.51□□□□□ -1.37
SCN4AP35499 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.51□□□□□ -1.37
SCN4AP35499 IRF5P1-201ENST00000504852 2164 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 AC010329.1-201ENST00000593903 8328 ntBASIC6.51□□□□□ -1.37
SCN4AP35499 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.51□□□□□ -1.37
SCN4AP35499 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SCN4AP35499 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 RNU6-398P-201ENST00000384143 109 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AL049693.1-201ENST00000402760 611 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 OR5M12P-201ENST00000423388 929 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.5□□□□□ -1.37
SCN4AP35499 IGBP1P5-201ENST00000507524 1000 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.5□□□□□ -1.37
SCN4AP35499 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.5□□□□□ -1.37
SCN4AP35499 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
SCN4AP35499 AGGF1P7-201ENST00000562369 913 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AL162431.4-201ENST00000604674 411 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 AL352984.2-202ENST00000613699 155 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC245389.2-201ENST00000616023 576 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC242843.1-201ENST00000618702 573 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 AC099494.2-201ENST00000623371 978 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.5□□□□□ -1.37
SCN4AP35499 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.5□□□□□ -1.37
SCN4AP35499 AL731534.1-201ENST00000434711 269 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 RHOT1P3-201ENST00000436571 331 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.5□□□□□ -1.37
SCN4AP35499 Z92846.1-201ENST00000456203 268 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.5□□□□□ -1.37
SCN4AP35499 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.5□□□□□ -1.37
SCN4AP35499 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.5□□□□□ -1.37
SCN4AP35499 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
SCN4AP35499 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.5□□□□□ -1.37
SCN4AP35499 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.5□□□□□ -1.37
SCN4AP35499 AC104687.2-201ENST00000604442 342 ntBASIC6.5□□□□□ -1.37
SCN4AP35499 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SCN4AP35499 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
SCN4AP35499 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
SCN4AP35499 AC079741.1-201ENST00000321498 212 ntBASIC6.49□□□□□ -1.37
SCN4AP35499 AC007562.1-201ENST00000421819 517 ntBASIC6.49□□□□□ -1.37
SCN4AP35499 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.49□□□□□ -1.37
SCN4AP35499 AC023274.2-201ENST00000445264 521 ntBASIC6.49□□□□□ -1.37
SCN4AP35499 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 AC134349.2-201ENST00000535136 910 ntBASIC6.49□□□□□ -1.37
SCN4AP35499 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.49□□□□□ -1.37
SCN4AP35499 MIR4691-201ENST00000583764 85 ntBASIC6.49□□□□□ -1.37
SCN4AP35499 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.49□□□□□ -1.37
SCN4AP35499 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
SCN4AP35499 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
SCN4AP35499 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
SCN4AP35499 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
SCN4AP35499 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms