Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC009220.2-201ENST00000489759 1751 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 GTF2IP4-201ENST00000453092 2054 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 ZNF833P-201ENST00000424938 1494 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 MSL3P1-202ENST00000440028 1468 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC12P31275 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC12P31275 MT-TH-201ENST00000387441 69 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 RNU6-920P-201ENST00000410926 92 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 RNU6-575P-201ENST00000411326 105 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 NPM1P11-201ENST00000417106 855 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC006366.1-201ENST00000422002 759 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC134879.1-201ENST00000426062 394 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 USP9YP31-201ENST00000431405 881 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC009237.4-201ENST00000441078 238 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 HMGN1P32-201ENST00000441744 256 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC12P31275 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 RPSAP7-201ENST00000456871 885 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC104687.1-201ENST00000485829 412 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 LECT2-203ENST00000512872 762 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 RNU2-30P-201ENST00000516209 141 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 Y_RNA.695-201ENST00000516715 107 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 AP003084.1-201ENST00000524828 742 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC010247.1-201ENST00000527895 759 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 MIR4800-201ENST00000537353 80 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC008126.1-201ENST00000549019 480 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC12P31275 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC090971.3-201ENST00000557871 1041 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC12P31275 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC12P31275 RN7SL66P-201ENST00000582099 264 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 AL355333.1-201ENST00000605632 279 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AC015819.1-201ENST00000613588 663 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC12P31275 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC020633.1-201ENST00000468439 2247 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 SNX18P3-202ENST00000565670 1750 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC12P31275 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC12P31275 AC025263.3-201ENST00000622965 1396 ntBASIC6.31□□□□□ -1.4
HOXC12P31275 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
HOXC12P31275 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC6.3□□□□□ -1.4
HOXC12P31275 SLC16A4-202ENST00000369781 2082 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 RND3-201ENST00000263895 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC12P31275 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC12P31275 AC100871.1-201ENST00000507871 1456 ntBASIC6.3□□□□□ -1.4
HOXC12P31275 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC12P31275 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXC12P31275 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC12P31275 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
HOXC12P31275 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms