Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 VDAC2P4-201ENST00000452925 711 ntBASIC5.24□□□□□ -1.57
SDC1P18827 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.24□□□□□ -1.57
SDC1P18827 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 AC021193.1-201ENST00000511607 420 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.24□□□□□ -1.57
SDC1P18827 SCARNA20.4-201ENST00000516969 131 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.24□□□□□ -1.57
SDC1P18827 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.24□□□□□ -1.57
SDC1P18827 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 AP000769.2-201ENST00000602344 396 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.24□□□□□ -1.57
SDC1P18827 AC108865.2-201ENST00000606881 432 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AL356608.1-201ENST00000610034 820 ntBASIC5.24□□□□□ -1.57
SDC1P18827 uc_338.7-201ENST00000621834 124 ntBASIC5.24□□□□□ -1.57
SDC1P18827 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.24□□□□□ -1.57
SDC1P18827 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 LINC01963-201ENST00000562038 3148 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC106872.5-201ENST00000508856 1416 ntBASIC5.23□□□□□ -1.57
SDC1P18827 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 AC125336.1-201ENST00000508893 2827 ntBASIC5.23□□□□□ -1.57
SDC1P18827 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.23□□□□□ -1.57
SDC1P18827 DNAJA1P5-201ENST00000440278 943 ntBASIC5.23□□□□□ -1.57
SDC1P18827 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 AC092106.1-201ENST00000444291 373 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC005297.1-201ENST00000444765 862 ntBASIC5.23□□□□□ -1.57
SDC1P18827 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 AC130364.2-201ENST00000528639 604 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AP004609.2-201ENST00000532177 190 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.23□□□□□ -1.57
SDC1P18827 OR11H3P-201ENST00000554547 982 ntBASIC5.23□□□□□ -1.57
SDC1P18827 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.23□□□□□ -1.57
SDC1P18827 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.23□□□□□ -1.57
SDC1P18827 AP005403.1-201ENST00000579720 229 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.23□□□□□ -1.57
SDC1P18827 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
SDC1P18827 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.23□□□□□ -1.57
SDC1P18827 PPATP2-201ENST00000605635 508 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC135068.5-201ENST00000624197 983 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC073869.8-201ENST00000641806 335 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC008691.1-209ENST00000642094 814 ntBASIC5.23□□□□□ -1.57
SDC1P18827 AC120036.2-201ENST00000509729 1474 ntBASIC5.23□□□□□ -1.57
SDC1P18827 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
SDC1P18827 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SDC1P18827 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SDC1P18827 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.22□□□□□ -1.57
SDC1P18827 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.22□□□□□ -1.57
SDC1P18827 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SDC1P18827 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.22□□□□□ -1.57
SDC1P18827 Z83820.1-201ENST00000456978 1499 ntBASIC5.22□□□□□ -1.57
SDC1P18827 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
SDC1P18827 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
SDC1P18827 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 RN7SKP240-201ENST00000410583 375 ntBASIC5.22□□□□□ -1.57
SDC1P18827 VN1R3-201ENST00000418822 919 ntBASIC5.22□□□□□ -1.57
SDC1P18827 VTI1BP4-201ENST00000427516 527 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AL136231.1-201ENST00000429407 730 ntBASIC5.22□□□□□ -1.57
SDC1P18827 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.22□□□□□ -1.57
SDC1P18827 CBX1P2-201ENST00000453841 458 ntBASIC5.22□□□□□ -1.57
SDC1P18827 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.22□□□□□ -1.57
SDC1P18827 AC019084.1-201ENST00000457337 432 ntBASIC5.22□□□□□ -1.57
SDC1P18827 RN7SL168P-201ENST00000463821 279 ntBASIC5.22□□□□□ -1.57
SDC1P18827 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
SDC1P18827 AC012123.2-201ENST00000485809 248 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms