Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MTND2P17-201ENST00000550281 688 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 HSPE1P2-201ENST00000554777 306 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AGGF1P7-201ENST00000562369 913 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 DPPA2P4-201ENST00000563717 878 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 MIR4433B-201ENST00000581329 102 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 LSM1P2-201ENST00000604911 322 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC093388.1-201ENST00000609166 430 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC090607.5-201ENST00000615692 224 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 RN7SL544P-201ENST00000617232 284 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 RN7SL763P-201ENST00000620922 284 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC103703.1-201ENST00000634783 663 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC106872.5-201ENST00000508856 1416 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 AC140134.1-201ENST00000511830 3544 ntBASIC5.39□□□□□ -1.55
ATG4BQ9Y4P1 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 UGT2B24P-201ENST00000514441 1597 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL355834.1-201ENST00000556602 3965 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 KARSP1-201ENST00000451871 1752 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MIR375-201ENST00000362103 64 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 SNORA64.1-201ENST00000362600 132 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 Y_RNA.62-201ENST00000362840 99 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 RN7SKP292-201ENST00000365522 317 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 NENFP1-201ENST00000419476 466 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL022331.1-201ENST00000429025 477 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 SETP20-201ENST00000457046 852 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MTCYBP14-201ENST00000457471 715 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 NXT1P1-201ENST00000458481 316 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC108751.3-201ENST00000461814 1020 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 PPIAP19-201ENST00000486414 492 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC104109.1-201ENST00000498563 436 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC025857.1-201ENST00000525252 377 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 HMGB1P42-201ENST00000532126 553 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC137627.1-201ENST00000545761 289 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC008126.1-201ENST00000549019 480 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 DHFRP1-201ENST00000579682 559 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC127024.6-201ENST00000621598 424 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AL355480.1-201ENST00000629041 99 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC000095.2-202ENST00000637415 154 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC087565.3-203ENST00000641018 837 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC004076.2-201ENST00000620532 3323 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 MRE11P1-201ENST00000464884 2127 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AC011503.2-201ENST00000594230 1500 ntBASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.38□□□□□ -1.55
ATG4BQ9Y4P1 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
ATG4BQ9Y4P1 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms