Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RPL31P15-201ENST00000449770 338 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 NXT1P1-201ENST00000458481 316 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC093719.1-201ENST00000480427 441 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 MRPS16P1-201ENST00000523462 412 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AL354950.1-201ENST00000614150 568 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC241377.1-201ENST00000619797 406 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC127024.6-201ENST00000621598 424 ntBASIC5.66□□□□□ -1.5
VPS35Q96QK1 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS35Q96QK1 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VPS35Q96QK1 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS35Q96QK1 AC007842.1-201ENST00000597336 2039 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 MIPEPP2-201ENST00000422560 1819 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 RNF19BPY-201ENST00000458209 1550 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 BMS1P17-202ENST00000416720 316 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC104843.2-201ENST00000427666 297 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 SUMO2P3-201ENST00000438311 288 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VPS35Q96QK1 RPL12P39-201ENST00000455456 496 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC087672.1-201ENST00000479876 766 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 PPIAP19-201ENST00000486414 492 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 FTH1P11-201ENST00000517577 551 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC060780.2-201ENST00000589047 198 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AL035661.1-201ENST00000620459 1144 ntBASIC5.65□□□□□ -1.5
VPS35Q96QK1 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS35Q96QK1 AC027279.1-201ENST00000568885 4284 ntBASIC5.65□□□□□ -1.51
VPS35Q96QK1 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS35Q96QK1 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS35Q96QK1 ADAM24P-201ENST00000398655 2101 ntBASIC5.65□□□□□ -1.51
VPS35Q96QK1 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS35Q96QK1 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
VPS35Q96QK1 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 RNA5SP46-201ENST00000362370 120 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 RNF10P1-201ENST00000418589 369 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC064862.4-201ENST00000442180 334 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 HMGN1P36-201ENST00000446623 298 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS35Q96QK1 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 RPS7P6-201ENST00000485777 579 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 DUTP1-201ENST00000493631 470 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 UGT2A3P7-201ENST00000510485 734 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC139697.1-201ENST00000548429 745 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC135626.1-201ENST00000556983 435 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AGGF1P7-201ENST00000562369 913 ntBASIC5.64□□□□□ -1.51
VPS35Q96QK1 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS35Q96QK1 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms