Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CFL1P1-202ENST00000432948 411 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 FTLP19-201ENST00000433300 394 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RAB9AP5-201ENST00000437794 597 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ARAFP2-201ENST00000440565 559 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RAB9AP2-201ENST00000443911 597 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RPS17P15-201ENST00000475609 349 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RN7SL184P-201ENST00000488308 297 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 OR7E157P-201ENST00000494376 911 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ASNSP4-201ENST00000511103 447 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 MIR2117-201ENST00000516780 80 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AP003080.1-202ENST00000526526 915 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 HMGB1P42-201ENST00000532126 553 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ADAM3B-201ENST00000569937 840 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AP002884.5-201ENST00000595053 1132 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC067838.1-201ENST00000606064 577 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC021422.1-201ENST00000621212 473 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC022919.1-201ENST00000624979 626 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 AC083843.2-201ENST00000568248 6253 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 HSPD1P8-201ENST00000400121 1658 ntBASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
HDDC3Q8N4P3 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AL121839.2-201ENST00000565058 6943 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 CASC19-248ENST00000641674 1356 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC109780.1-201ENST00000451768 1344 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 SNORA64.1-201ENST00000362600 132 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 OR2W4P-201ENST00000406496 926 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 DPPA2P3-201ENST00000411853 655 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AL645937.3-201ENST00000453647 936 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 PPP1R11P1-201ENST00000486095 376 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RNU6-615P-201ENST00000516065 106 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 LSM1P2-201ENST00000604911 322 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC008115.3-201ENST00000614874 549 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC015660.5-201ENST00000623238 564 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 AC007683.2-201ENST00000624681 714 ntBASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HDDC3Q8N4P3 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.48
HDDC3Q8N4P3 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 SNORA70.9-201ENST00000384370 135 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms