Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 AC019322.1-201ENST00000571869 389 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
FOXA1P55317 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.26□□□□□ -1.57
FOXA1P55317 PPATP2-201ENST00000605635 508 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC108865.2-201ENST00000606881 432 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AL022394.1-201ENST00000606979 292 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.26□□□□□ -1.57
FOXA1P55317 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 MIR7109-201ENST00000613748 65 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.26□□□□□ -1.57
FOXA1P55317 FRG1EP-201ENST00000634469 770 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 LINC02019-201ENST00000608605 2060 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.26□□□□□ -1.57
FOXA1P55317 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.26□□□□□ -1.57
FOXA1P55317 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.26□□□□□ -1.57
FOXA1P55317 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
FOXA1P55317 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
FOXA1P55317 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 ADAM5-202ENST00000399789 1942 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AC092376.2-201ENST00000622621 4116 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 RN7SKP6-201ENST00000364795 319 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 OR1L6-202ENST00000373684 1044 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 MIR551A-201ENST00000385042 96 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 RNU6-316P-201ENST00000391027 107 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 DBIP1-201ENST00000401435 260 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 RPS3AP2-201ENST00000407190 754 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 HSPD1P12-201ENST00000429127 1069 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 RPL19P16-201ENST00000433839 588 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.25□□□□□ -1.57
FOXA1P55317 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.25□□□□□ -1.57
FOXA1P55317 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.25□□□□□ -1.57
FOXA1P55317 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 CR383656.1-201ENST00000484916 377 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 RPL15P21-201ENST00000495592 567 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.25□□□□□ -1.57
FOXA1P55317 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.25□□□□□ -1.57
FOXA1P55317 AC027369.5-201ENST00000533838 755 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.25□□□□□ -1.57
FOXA1P55317 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.25□□□□□ -1.57
FOXA1P55317 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.25□□□□□ -1.57
FOXA1P55317 AC134669.1-201ENST00000581275 672 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 AL118522.2-201ENST00000616045 615 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.25□□□□□ -1.57
FOXA1P55317 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.25□□□□□ -1.57
FOXA1P55317 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
FOXA1P55317 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
FOXA1P55317 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 AP005435.3-201ENST00000531260 3198 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
FOXA1P55317 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
FOXA1P55317 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 RN7SKP240-201ENST00000410583 375 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
FOXA1P55317 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 AL590399.4-201ENST00000436561 601 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 SUMO2P3-201ENST00000438311 288 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 AC019185.1-201ENST00000442718 389 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 AC016772.1-201ENST00000444170 1261 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 OR52E3P-201ENST00000452083 936 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 AC093827.1-201ENST00000480094 861 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms