Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 AC092651.1-201ENST00000426110 312 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 AC016712.1-201ENST00000431088 378 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 RPL7P11-201ENST00000437586 658 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.72□□□□□ -1.33
COL5A3P25940 RPS4XP20-201ENST00000505751 772 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.72□□□□□ -1.33
COL5A3P25940 OR4A43P-201ENST00000532938 908 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 AC005000.1-201ENST00000536192 288 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.72□□□□□ -1.33
COL5A3P25940 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.72□□□□□ -1.33
COL5A3P25940 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.72□□□□□ -1.33
COL5A3P25940 AC105105.5-201ENST00000622635 1294 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.72□□□□□ -1.33
COL5A3P25940 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.72□□□□□ -1.33
COL5A3P25940 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL5A3P25940 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL5A3P25940 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.33
COL5A3P25940 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.71□□□□□ -1.33
COL5A3P25940 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC6.71□□□□□ -1.33
COL5A3P25940 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL5A3P25940 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC6.71□□□□□ -1.33
COL5A3P25940 AC010132.2-201ENST00000295493 1043 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COL5A3P25940 GAPDHP15-201ENST00000398586 975 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 NPM1P40-201ENST00000412758 733 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 RPL7P56-201ENST00000429441 717 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AL390879.1-201ENST00000439143 386 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL5A3P25940 ST13P12-201ENST00000508958 1094 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 UBE2FP2-201ENST00000566646 462 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.71□□□□□ -1.34
COL5A3P25940 MIR5096-201ENST00000583713 70 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 MIR4737-201ENST00000583979 81 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AC008814.1-201ENST00000603797 406 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AC005252.1-201ENST00000604518 1063 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.71□□□□□ -1.34
COL5A3P25940 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.71□□□□□ -1.34
COL5A3P25940 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.71□□□□□ -1.34
COL5A3P25940 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 AL359715.3-201ENST00000569267 2123 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL5A3P25940 AC018765.1-201ENST00000623357 3446 ntBASIC6.71□□□□□ -1.34
COL5A3P25940 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COL5A3P25940 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
COL5A3P25940 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL5A3P25940 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL5A3P25940 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
COL5A3P25940 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 RNU1-59P-201ENST00000364829 162 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 U3.28-201ENST00000391249 210 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 RPL10P10-201ENST00000403509 664 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL5A3P25940 LINC02210-201ENST00000444561 288 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 REG1CP-206ENST00000447469 496 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.7□□□□□ -1.34
COL5A3P25940 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.7□□□□□ -1.34
COL5A3P25940 U1.25-201ENST00000614085 162 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 U1.34-201ENST00000618578 162 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 U1.31-201ENST00000620022 160 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 AL450226.2-201ENST00000622913 439 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC063976.2-201ENST00000425667 3556 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 ZNF969P-201ENST00000510345 2341 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL5A3P25940 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.7□□□□□ -1.34
COL5A3P25940 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 GSTA7P-201ENST00000438425 448 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.7□□□□□ -1.34
COL5A3P25940 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.7□□□□□ -1.34
COL5A3P25940 AC009220.1-201ENST00000451614 275 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 COX6B1P5-201ENST00000509843 249 ntBASIC6.7□□□□□ -1.34
COL5A3P25940 RAB9BP1-201ENST00000519581 626 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms