Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 MIR105-2-201ENST00000385083 81 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 RPS4XP5-201ENST00000419038 768 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AC007562.1-201ENST00000421819 517 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 AL022331.1-201ENST00000429025 477 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 DEFA9P-201ENST00000433042 285 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 ARL4AP4-201ENST00000434170 518 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AC013410.1-201ENST00000436223 1232 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 AC023274.2-201ENST00000445264 521 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 EIF3LP3-201ENST00000495197 822 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 ST13P12-201ENST00000508958 1094 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 IGKV2-18-201ENST00000522607 343 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.29□□□□□ -1.56
HOXD4P09016 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 MIR1273E-201ENST00000581165 102 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 AC008536.1-201ENST00000602872 669 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 Z95327.3-201ENST00000610385 572 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 AC079776.5-201ENST00000641920 211 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
HOXD4P09016 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 AC002525.1-201ENST00000624392 1622 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 AL078595.2-201ENST00000605309 1780 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC079753.1-201ENST00000623243 3868 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 RNA5SP46-201ENST00000362370 120 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 RNA5SP132-201ENST00000364725 118 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 NPM1P38-201ENST00000403835 865 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC002504.1-201ENST00000438281 691 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC112187.1-201ENST00000455837 479 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXD4P09016 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.28□□□□□ -1.56
HOXD4P09016 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXD4P09016 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 MIR4660-201ENST00000583549 74 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC107993.1-201ENST00000591343 684 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 SUMO2P15-201ENST00000604285 278 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 AL161912.3-201ENST00000605404 628 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 AL353729.2-201ENST00000605859 1249 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 RN7SL544P-201ENST00000617232 284 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 RN7SL763P-201ENST00000620922 284 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
HOXD4P09016 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXD4P09016 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.28□□□□□ -1.56
HOXD4P09016 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXD4P09016 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.28□□□□□ -1.56
HOXD4P09016 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.28□□□□□ -1.56
HOXD4P09016 AC004076.2-201ENST00000620532 3323 ntBASIC5.28□□□□□ -1.56
HOXD4P09016 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HOXD4P09016 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXD4P09016 Z83820.1-201ENST00000456978 1499 ntBASIC5.27□□□□□ -1.57
HOXD4P09016 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
HOXD4P09016 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.27□□□□□ -1.57
HOXD4P09016 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXD4P09016 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
HOXD4P09016 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
HOXD4P09016 U3.10-201ENST00000364459 214 ntBASIC5.27□□□□□ -1.57
HOXD4P09016 RNA5SP211-201ENST00000365516 117 ntBASIC5.27□□□□□ -1.57
HOXD4P09016 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
HOXD4P09016 EI24P3-201ENST00000399046 1062 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms