Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 GAPDHP24-201ENST00000328713 983 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 SNORD1C-201ENST00000363315 78 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 NPM1P38-201ENST00000403835 865 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RN7SKP59-201ENST00000410520 314 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AL365220.1-201ENST00000432923 399 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RPS12P17-201ENST00000438591 377 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 SPRYD7P1-201ENST00000443861 570 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 FRG2FP-204ENST00000453982 852 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC079080.1-201ENST00000479841 822 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RN7SL184P-201ENST00000488308 297 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RNA5SP34-201ENST00000516887 130 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC008429.4-201ENST00000521201 182 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC130364.2-201ENST00000528639 604 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC025423.2-201ENST00000537570 439 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AL049779.3-201ENST00000557141 606 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC007346.2-201ENST00000564816 892 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AP000919.1-201ENST00000582850 985 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 MTCO1P1-201ENST00000624263 1081 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC022164.1-201ENST00000568767 2673 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 AL132656.3-201ENST00000606384 1595 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 YES1P1-201ENST00000418510 1628 ntBASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
CCDC3Q9BQI4 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 SRRM1P3-201ENST00000426911 2678 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 NPM1P10-201ENST00000398310 865 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL050305.1-201ENST00000399993 1230 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 OR2W4P-201ENST00000406496 926 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL357752.1-201ENST00000412817 349 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 MTND4LP21-201ENST00000415303 295 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC013268.2-201ENST00000420753 337 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 CFL1P1-202ENST00000432948 411 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC012075.1-201ENST00000436549 580 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC007386.1-201ENST00000455212 582 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC128716.1-201ENST00000475129 166 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 RPL32P33-201ENST00000487023 394 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 RNU6-362P-201ENST00000516736 90 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC026616.1-201ENST00000523157 525 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 MRPS16P1-201ENST00000523462 412 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 HMGN2P47-201ENST00000559378 272 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 AL583832.1-201ENST00000603227 784 ntBASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC3Q9BQI4 SNORA35B-201ENST00000607417 129 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 124.6 ms