Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AC068228.1-201ENST00000461723 211 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AL049874.2-201ENST00000492636 288 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AL359715.3-201ENST00000569267 2123 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 OR7A8P-201ENST00000595427 913 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 RPL12P48-201ENST00000605620 304 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 SAMMSON-227ENST00000642114 1199 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AC015689.2-201ENST00000528172 1738 ntBASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.18□□□□□ -1.42
CCDC112Q8NEF3 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RNA5SP241-201ENST00000391326 114 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 CTSL3P-202ENST00000412179 788 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RIMKLBP2-201ENST00000424737 654 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 NANOGP9-201ENST00000439890 892 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AMYP1-201ENST00000440059 1023 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RN7SL269P-201ENST00000467795 305 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC099521.1-201ENST00000482557 334 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 NPM1P21-201ENST00000513394 762 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 ZNF519P4-201ENST00000514008 125 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RN7SKP253-201ENST00000516424 309 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC009879.1-201ENST00000520029 839 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 PMS2P3-207ENST00000529061 717 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC068993.1-201ENST00000546724 589 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AGGF1P7-201ENST00000562369 913 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 MRPS21P8-201ENST00000569196 235 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 RN7SL290P-201ENST00000578661 300 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC124916.2-201ENST00000604416 224 ntBASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC112Q8NEF3 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC104623.2-202ENST00000623477 4002 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AL034549.2-201ENST00000618285 3373 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 RNA5SP110-201ENST00000362638 115 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 RN7SKP108-201ENST00000411367 328 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC012512.1-201ENST00000446594 718 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 IGBP1P3-201ENST00000447449 1000 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 HMGN1P17-201ENST00000513734 295 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 RNU6-513P-201ENST00000516104 104 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 OR8A2P-201ENST00000528631 952 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 MIR4472-2-201ENST00000582069 67 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AP001437.1-201ENST00000608783 456 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 AC073389.3-201ENST00000609434 935 ntBASIC6.16□□□□□ -1.42
CCDC112Q8NEF3 FAM27E2-201ENST00000619668 403 ntBASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms