Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 RNA5SP487-201ENST00000410186 122 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC092647.2-201ENST00000452998 253 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 OSTCP1-201ENST00000455507 450 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 DUTP1-201ENST00000493631 470 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC234771.5-201ENST00000600161 514 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AL353662.3-201ENST00000625131 237 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 CASC19-281ENST00000642118 1554 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC010132.2-201ENST00000295493 1043 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 NDUFA5P9-201ENST00000472609 340 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 TOMM22P4-201ENST00000511318 336 ntBASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
CCDC88AQ3V6T2 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 MAPK10-338ENST00000641647 3362 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AL356317.1-201ENST00000396110 1436 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 RNA5SP91-201ENST00000390902 119 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 RNU4-64P-201ENST00000410795 131 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 LDHAP2-201ENST00000437325 985 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 RPL7P16-201ENST00000479738 738 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 EIF1P7-201ENST00000487533 337 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 IGLV3-24-201ENST00000517477 197 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AC140479.2-201ENST00000421567 3130 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 AC011493.1-201ENST00000596753 1632 ntBASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC88AQ3V6T2 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AL133388.1-201ENST00000404509 287 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 ATP6V1G1P7-201ENST00000415853 349 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 TPT1P13-201ENST00000449760 499 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC002090.1-201ENST00000625000 2138 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 EPS15P1-202ENST00000459691 2071 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC034229.2-201ENST00000566945 2508 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AL034546.1-201ENST00000623740 3693 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 RN7SKP147-201ENST00000517154 244 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AC095055.1-201ENST00000603472 1113 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 NANOGP3-201ENST00000605855 286 ntBASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms