Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 RN7SL787P-201ENST00000613000 284 ntBASIC5.29□□□□□ -1.56
LIM2P55344 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC025574.2-201ENST00000615621 514 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 AC103703.1-201ENST00000634783 663 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC132825.8-201ENST00000640783 297 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC008691.1-209ENST00000642094 814 ntBASIC5.29□□□□□ -1.56
LIM2P55344 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 AC006206.1-201ENST00000544842 3387 ntBASIC5.29□□□□□ -1.56
LIM2P55344 SYT14P1-202ENST00000600441 1448 ntBASIC5.29□□□□□ -1.56
LIM2P55344 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.29□□□□□ -1.56
LIM2P55344 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 AC078880.4-201ENST00000617627 1749 ntBASIC5.28□□□□□ -1.56
LIM2P55344 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 LINC01963-201ENST00000562038 3148 ntBASIC5.28□□□□□ -1.56
LIM2P55344 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 BCORP1-203ENST00000513194 5093 ntBASIC5.28□□□□□ -1.56
LIM2P55344 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 RN7SKP145-201ENST00000363291 303 ntBASIC5.28□□□□□ -1.56
LIM2P55344 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
LIM2P55344 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 NPM1P18-201ENST00000434232 732 ntBASIC5.28□□□□□ -1.56
LIM2P55344 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.28□□□□□ -1.56
LIM2P55344 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 AL450023.1-201ENST00000450868 751 ntBASIC5.28□□□□□ -1.56
LIM2P55344 VDAC2P4-201ENST00000452925 711 ntBASIC5.28□□□□□ -1.56
LIM2P55344 YWHAEP1-201ENST00000453697 763 ntBASIC5.28□□□□□ -1.56
LIM2P55344 LDHBP2-201ENST00000456969 1005 ntBASIC5.28□□□□□ -1.56
LIM2P55344 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.28□□□□□ -1.56
LIM2P55344 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 AC122688.1-201ENST00000541494 223 ntBASIC5.28□□□□□ -1.56
LIM2P55344 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.28□□□□□ -1.56
LIM2P55344 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.28□□□□□ -1.56
LIM2P55344 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.28□□□□□ -1.56
LIM2P55344 RNA5SP440-201ENST00000612665 119 ntBASIC5.28□□□□□ -1.56
LIM2P55344 AC007786.3-201ENST00000615154 596 ntBASIC5.28□□□□□ -1.56
LIM2P55344 AC126175.1-201ENST00000617041 758 ntBASIC5.28□□□□□ -1.56
LIM2P55344 MIR6133-201ENST00000617057 108 ntBASIC5.28□□□□□ -1.56
LIM2P55344 AC026124.2-201ENST00000621847 656 ntBASIC5.28□□□□□ -1.56
LIM2P55344 CU639417.4-201ENST00000623928 207 ntBASIC5.28□□□□□ -1.56
LIM2P55344 AC007683.2-201ENST00000624681 714 ntBASIC5.28□□□□□ -1.56
LIM2P55344 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 MT-RNR2-201ENST00000387347 1559 ntBASIC5.28□□□□□ -1.56
LIM2P55344 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LIM2P55344 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.28□□□□□ -1.56
LIM2P55344 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.28□□□□□ -1.56
LIM2P55344 AC007938.2-201ENST00000604666 2634 ntBASIC5.27□□□□□ -1.57
LIM2P55344 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.27□□□□□ -1.57
LIM2P55344 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
LIM2P55344 AC004656.1-201ENST00000568479 4951 ntBASIC5.27□□□□□ -1.57
LIM2P55344 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.27□□□□□ -1.57
LIM2P55344 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.27□□□□□ -1.57
LIM2P55344 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIM2P55344 SAMMSON-210ENST00000641260 1308 ntBASIC5.27□□□□□ -1.57
LIM2P55344 OFD1P17-201ENST00000437639 3018 ntBASIC5.27□□□□□ -1.57
LIM2P55344 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIM2P55344 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIM2P55344 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.27□□□□□ -1.57
LIM2P55344 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIM2P55344 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.27□□□□□ -1.57
LIM2P55344 SNORA17A-201ENST00000391185 133 ntBASIC5.27□□□□□ -1.57
LIM2P55344 RN7SKP286-201ENST00000410894 299 ntBASIC5.27□□□□□ -1.57
LIM2P55344 OR6E1P-201ENST00000414424 923 ntBASIC5.27□□□□□ -1.57
LIM2P55344 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms