Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005520.3-201ENST00000602874 370 ntBASIC5.71□□□□□ -1.5
MSH3P20585 BNIP3P7-201ENST00000605641 516 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC012467.1-201ENST00000607740 256 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC015982.1-201ENST00000608113 465 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AC239803.2-201ENST00000610161 430 ntBASIC5.71□□□□□ -1.5
MSH3P20585 AL353684.1-201ENST00000622677 1120 ntBASIC5.71□□□□□ -1.5
MSH3P20585 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
MSH3P20585 AC091305.2-201ENST00000624049 1576 ntBASIC5.71□□□□□ -1.5
MSH3P20585 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
MSH3P20585 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
MSH3P20585 AC093671.1-201ENST00000624981 2929 ntBASIC5.71□□□□□ -1.5
MSH3P20585 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 CASC19-260ENST00000641828 2001 ntBASIC5.7□□□□□ -1.5
MSH3P20585 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.7□□□□□ -1.5
MSH3P20585 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 MFSD8-239ENST00000641590 2479 ntBASIC5.7□□□□□ -1.5
MSH3P20585 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH3P20585 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
MSH3P20585 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.7□□□□□ -1.5
MSH3P20585 RPS23P2-201ENST00000463671 415 ntBASIC5.7□□□□□ -1.5
MSH3P20585 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 RPL32P33-201ENST00000487023 394 ntBASIC5.7□□□□□ -1.5
MSH3P20585 GLUD1P3-202ENST00000508551 200 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC090568.1-201ENST00000509499 856 ntBASIC5.7□□□□□ -1.5
MSH3P20585 RNU4-18P-201ENST00000516751 149 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC021678.3-201ENST00000517893 476 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC139365.2-201ENST00000517972 253 ntBASIC5.7□□□□□ -1.5
MSH3P20585 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH3P20585 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.7□□□□□ -1.5
MSH3P20585 AP001284.1-201ENST00000528393 2118 ntBASIC5.7□□□□□ -1.5
MSH3P20585 SNRPGP1-201ENST00000553864 222 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH3P20585 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH3P20585 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH3P20585 AC234775.3-201ENST00000564612 656 ntBASIC5.7□□□□□ -1.5
MSH3P20585 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH3P20585 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.7□□□□□ -1.5
MSH3P20585 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.7□□□□□ -1.5
MSH3P20585 AP001496.3-201ENST00000580230 913 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC107993.1-201ENST00000591343 684 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC138473.1-201ENST00000605717 526 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AC090607.5-201ENST00000615692 224 ntBASIC5.7□□□□□ -1.5
MSH3P20585 AL391597.1-201ENST00000618707 694 ntBASIC5.7□□□□□ -1.5
MSH3P20585 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.7□□□□□ -1.5
MSH3P20585 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 AC079776.5-201ENST00000641920 211 ntBASIC5.7□□□□□ -1.5
MSH3P20585 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
MSH3P20585 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
MSH3P20585 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
MSH3P20585 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 BRAFP1-201ENST00000445336 2703 ntBASIC5.69□□□□□ -1.5
MSH3P20585 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 AC138907.8-201ENST00000623981 2256 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH3P20585 RNA5SP453-201ENST00000362503 119 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC083799.1-201ENST00000366451 910 ntBASIC5.69□□□□□ -1.5
MSH3P20585 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
MSH3P20585 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AL022331.1-201ENST00000429025 477 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH3P20585 HMGB3P24-201ENST00000433260 622 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH3P20585 RPS17P15-201ENST00000475609 349 ntBASIC5.69□□□□□ -1.5
MSH3P20585 RN7SL570P-201ENST00000484405 292 ntBASIC5.69□□□□□ -1.5
MSH3P20585 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH3P20585 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH3P20585 OR8Q1P-201ENST00000526467 655 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AP004609.2-201ENST00000532177 190 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.69□□□□□ -1.5
MSH3P20585 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH3P20585 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
MSH3P20585 AC090286.3-201ENST00000573133 187 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC016839.1-201ENST00000578162 867 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AP000919.1-201ENST00000582850 985 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC015802.2-201ENST00000589690 189 ntBASIC5.69□□□□□ -1.5
MSH3P20585 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.69□□□□□ -1.5
MSH3P20585 AC241377.1-201ENST00000619797 406 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AL118508.4-201ENST00000624142 1176 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC103798.2-201ENST00000624292 632 ntBASIC5.69□□□□□ -1.5
MSH3P20585 AC022919.1-201ENST00000624979 626 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms