Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL731532.1-201ENST00000623972 4236 ntBASIC5.52□□□□□ -1.53
HOXC4P09017 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
HOXC4P09017 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXC4P09017 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC4P09017 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
HOXC4P09017 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC4P09017 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
HOXC4P09017 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXC4P09017 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC4P09017 AP000473.2-201ENST00000602659 1537 ntBASIC5.52□□□□□ -1.53
HOXC4P09017 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXC4P09017 AL449283.1-201ENST00000602631 3403 ntBASIC5.52□□□□□ -1.53
HOXC4P09017 AC009962.1-201ENST00000567327 3813 ntBASIC5.52□□□□□ -1.53
HOXC4P09017 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC4P09017 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXC4P09017 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXC4P09017 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HOXC4P09017 AC005261.2-201ENST00000593427 4258 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 AC010266.2-201ENST00000564741 3255 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 RNA5SP234-201ENST00000363916 119 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC009804.1-201ENST00000400949 179 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXC4P09017 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXC4P09017 RANP1-206ENST00000455094 651 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC011225.1-201ENST00000457751 369 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 SNORD125-201ENST00000459538 96 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC026348.1-201ENST00000462549 1053 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 RN7SL547P-201ENST00000490793 290 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC4P09017 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXC4P09017 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXC4P09017 NPM1P5-201ENST00000557228 838 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 IMMP1LP3-201ENST00000604197 224 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 SUGT1P3-202ENST00000604259 383 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC4P09017 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AL118522.2-201ENST00000616045 615 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC4P09017 CASC19-264ENST00000641912 1184 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC4P09017 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 Z83820.1-201ENST00000456978 1499 ntBASIC5.51□□□□□ -1.53
HOXC4P09017 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC4P09017 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXC4P09017 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC4P09017 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
HOXC4P09017 RNA5SP183-201ENST00000362452 119 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
HOXC4P09017 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC4P09017 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC4P09017 GTF3AP1-201ENST00000416942 1004 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 BX510359.3-201ENST00000422168 306 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 REREP1Y-201ENST00000422655 198 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC007161.1-204ENST00000423039 460 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 TMEM183AP1-205ENST00000432739 290 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 CFL1P1-202ENST00000432948 411 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC4P09017 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC4P09017 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.5□□□□□ -1.53
HOXC4P09017 REREP2Y-201ENST00000439103 200 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AL163193.1-201ENST00000444895 788 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.5□□□□□ -1.53
HOXC4P09017 RPL12P39-201ENST00000455456 496 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 RPL7P45-201ENST00000455851 743 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 AC108751.3-201ENST00000461814 1020 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 RN7SL51P-201ENST00000468230 285 ntBASIC5.5□□□□□ -1.53
HOXC4P09017 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC4P09017 RN7SL629P-201ENST00000489622 285 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms