Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC093155.2-201ENST00000420734 937 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AC099677.3-201ENST00000427081 395 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 RPS7P3-201ENST00000443360 580 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AL163193.1-201ENST00000444895 788 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXD4P09016 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXD4P09016 RNU6-775P-201ENST00000459318 96 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AC090589.1-201ENST00000473109 362 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AOX3P-204ENST00000491025 2107 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 GTF2IP11-201ENST00000526931 420 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXD4P09016 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXD4P09016 AL359219.2-201ENST00000555184 348 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 AC090651.1-201ENST00000567865 634 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.31□□□□□ -1.56
HOXD4P09016 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.31□□□□□ -1.56
HOXD4P09016 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.31□□□□□ -1.56
HOXD4P09016 SDR42E1P1-201ENST00000611327 477 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.31□□□□□ -1.56
HOXD4P09016 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.31□□□□□ -1.56
HOXD4P09016 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
HOXD4P09016 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
HOXD4P09016 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 AC119674.1-202ENST00000641333 1860 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HOXD4P09016 RN7SKP160-201ENST00000363804 340 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 AL354890.1-201ENST00000413730 346 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXD4P09016 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXD4P09016 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 SUMO2P3-201ENST00000438311 288 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 AL157385.1-201ENST00000446973 268 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 OSTCP1-201ENST00000455507 450 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 RPS17P15-201ENST00000475609 349 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AC006539.1-201ENST00000481419 501 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.3□□□□□ -1.56
HOXD4P09016 RNA5SP362-201ENST00000516048 118 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 IGLV2-28-201ENST00000520681 304 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AC008429.4-201ENST00000521201 182 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 MTND2P7-201ENST00000521337 640 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXD4P09016 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXD4P09016 OR4H6P-201ENST00000563771 921 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.3□□□□□ -1.56
HOXD4P09016 RNU4ATAC-201ENST00000580972 127 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AP000864.1-201ENST00000609424 650 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AL021918.2-201ENST00000613415 194 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AL445670.1-201ENST00000618889 801 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AL691477.1-201ENST00000624398 162 ntBASIC5.3□□□□□ -1.56
HOXD4P09016 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HOXD4P09016 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.3□□□□□ -1.56
HOXD4P09016 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HOXD4P09016 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 AL731532.1-201ENST00000623972 4236 ntBASIC5.29□□□□□ -1.56
HOXD4P09016 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.29□□□□□ -1.56
HOXD4P09016 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.29□□□□□ -1.56
HOXD4P09016 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HOXD4P09016 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms