Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTND2P11-201ENST00000423638 648 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC099677.3-201ENST00000427081 395 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL590623.1-201ENST00000427864 105 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC009963.3-201ENST00000458090 486 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC108751.3-201ENST00000461814 1020 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC098847.1-201ENST00000473094 348 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC006539.1-201ENST00000481419 501 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 IGLV3-30-201ENST00000524362 298 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 BCAS2P1-201ENST00000528022 632 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC005000.1-201ENST00000536192 288 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 NDUFA5P11-201ENST00000567995 343 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 MIR6861-201ENST00000618657 64 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL359742.1-201ENST00000622497 540 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC091948.2-201ENST00000636510 279 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 AL031595.2-201ENST00000624215 19071 ntBASIC5.05□□□□□ -1.6
NKX3-1Q99801 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
NKX3-1Q99801 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.05□□□□□ -1.6
NKX3-1Q99801 LINC02019-201ENST00000608605 2060 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 OR9K1P-202ENST00000641111 3217 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL442128.2-201ENST00000620246 1824 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC068870.1-201ENST00000563737 2455 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 MTCO1P28-201ENST00000574177 1528 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 MIR7-1-201ENST00000384871 110 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 MIR1282-201ENST00000408865 101 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 RN7SKP240-201ENST00000410583 375 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL035422.1-201ENST00000414193 397 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 METTL15P3-201ENST00000415522 1221 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 RPL12P12-201ENST00000424633 501 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC099670.2-201ENST00000435130 321 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC110602.1-201ENST00000437414 318 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 RAB9AP5-201ENST00000437794 597 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 RAB9AP2-201ENST00000443911 597 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 RPL5P7-201ENST00000444235 813 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC083795.1-201ENST00000491760 320 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC005363.1-201ENST00000530779 351 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC007346.1-201ENST00000569208 867 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
NKX3-1Q99801 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC092474.3-201ENST00000603022 568 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL590410.1-201ENST00000617925 333 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AC103798.2-201ENST00000624292 632 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL356094.1-201ENST00000624663 1212 ntBASIC5.04□□□□□ -1.6
NKX3-1Q99801 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.04□□□□□ -1.6
NKX3-1Q99801 AL138820.1-201ENST00000617901 5305 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms