Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU6-718P-201ENST00000516166 105 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 IGKV2-29-201ENST00000521304 372 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 OR6M3P-201ENST00000531567 700 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AHI1-217ENST00000534469 680 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC084757.1-201ENST00000559987 490 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC013489.1-201ENST00000561140 598 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC105275.2-201ENST00000567907 711 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC027688.2-201ENST00000569009 511 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 MIR4262-201ENST00000578394 54 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 OR5AH1P-201ENST00000595968 283 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC115286.1-201ENST00000604298 434 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL451049.1-201ENST00000608672 497 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 BX255923.1-201ENST00000613309 681 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC025287.2-201ENST00000621911 668 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC110769.3-201ENST00000624567 1173 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 OR11H2-202ENST00000641517 1085 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC004520.1-201ENST00000608362 1413 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL031651.1-201ENST00000615357 1438 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL590065.1-201ENST00000603371 4774 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SOCS5P5-201ENST00000402732 1586 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 HKR1-223ENST00000591471 3472 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 AC131649.2-201ENST00000624925 4439 ntBASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CDY1-201ENST00000306609 2321 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 CDY1B-201ENST00000306882 2321 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC140Q96MF4 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 HKR1-203ENST00000541583 2758 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 CNOT4-207ENST00000451834 3507 ntAPPRIS ALT1 TSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RBMX2P2-201ENST00000257020 946 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL078621.1-201ENST00000272567 768 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RN7SKP63-201ENST00000363187 301 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RN7SKP174-201ENST00000363803 330 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ISY1-202ENST00000393292 988 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 PTMAP8-201ENST00000397729 342 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC025750.1-201ENST00000399891 379 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 LL22NC01-81G9.3-201ENST00000400221 992 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 TYMSP1-201ENST00000407851 869 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 RN7SKP131-201ENST00000410698 301 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 TMBIM7P-201ENST00000418074 855 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 Z97055.1-201ENST00000419730 712 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL953862.1-201ENST00000423016 168 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 MED15P9-201ENST00000424716 533 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 NIPA2P1-201ENST00000426223 976 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC073335.1-201ENST00000427776 363 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC009299.1-201ENST00000429684 717 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 PPIAP13-201ENST00000434706 478 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC002066.1-202ENST00000439070 699 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 LIN28AP2-201ENST00000445283 458 ntBASIC5.78□□□□□ -1.48
CCDC140Q96MF4 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC140Q96MF4 EEF1E1P1-201ENST00000446998 430 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms