Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC112198.4-201ENST00000515450 351 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 AP004607.5-201ENST00000532034 217 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC4.99□□□□□ -1.61
HOXA1P49639 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXA1P49639 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC092865.1-201ENST00000544395 1023 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC023080.1-201ENST00000551663 931 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.99□□□□□ -1.61
HOXA1P49639 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC010266.1-201ENST00000568962 442 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 DYNLL1P1-201ENST00000595442 269 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXA1P49639 AC096708.4-201ENST00000620563 552 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC010872.1-201ENST00000624225 675 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXA1P49639 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXA1P49639 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 CASC19-221ENST00000641309 1382 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HOXA1P49639 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.99□□□□□ -1.61
HOXA1P49639 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HOXA1P49639 AP001642.1-201ENST00000624727 2117 ntBASIC4.99□□□□□ -1.61
HOXA1P49639 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HOXA1P49639 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 OR55B1P-203ENST00000641518 2602 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 AL359091.1-201ENST00000449048 1734 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HOXA1P49639 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HOXA1P49639 SNORA7A-201ENST00000384765 139 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 CXADRP1-201ENST00000398098 1095 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 RPL12P23-201ENST00000405880 490 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC069282.1-201ENST00000411911 526 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 SEPT7P8-201ENST00000413308 775 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 OR52N3P-201ENST00000413417 934 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 VN1R37P-201ENST00000419096 748 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 E2F6P1-201ENST00000428850 745 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 IGLV3-4-201ENST00000432300 244 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AL731534.1-201ENST00000434711 269 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 AL645638.1-201ENST00000440519 361 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 E2F6P3-201ENST00000441743 743 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 BMS1P11-201ENST00000442351 885 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HOXA1P49639 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 BMS1P9-201ENST00000457640 885 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC073594.1-201ENST00000462065 364 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC104849.1-201ENST00000462623 405 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 RN7SL352P-201ENST00000466002 277 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 UCK2-205ENST00000469256 753 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 ENPP7P11-201ENST00000505915 627 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 GLUD1P3-202ENST00000508551 200 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC4.98□□□□□ -1.61
HOXA1P49639 MTATP6P9-201ENST00000515039 680 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 MINOS1P4-201ENST00000515470 318 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 SCARNA11.1-201ENST00000516918 132 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC068339.2-201ENST00000534395 618 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC023158.1-201ENST00000561632 1025 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.98□□□□□ -1.61
HOXA1P49639 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC4.98□□□□□ -1.61
HOXA1P49639 RPL29P33-201ENST00000587474 316 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC060780.2-201ENST00000589047 198 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC020916.2-201ENST00000591242 360 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC4.98□□□□□ -1.61
HOXA1P49639 KATNBL1P5-201ENST00000605015 517 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC135178.6-201ENST00000605314 398 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC018645.2-201ENST00000609151 472 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 AC007786.3-201ENST00000615154 596 ntBASIC4.98□□□□□ -1.61
HOXA1P49639 CXADRP3-202ENST00000617265 1100 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms