Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC7.3□□□□□ -1.24
HOXC9P31274 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
HOXC9P31274 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.3□□□□□ -1.24
HOXC9P31274 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 AL121886.1-201ENST00000358609 435 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
HOXC9P31274 AL589647.1-201ENST00000402485 466 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 U3.36-201ENST00000408418 213 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 VN1R54P-201ENST00000435210 1049 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.3□□□□□ -1.24
HOXC9P31274 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.3□□□□□ -1.24
HOXC9P31274 AL672138.1-201ENST00000450604 1015 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.3□□□□□ -1.24
HOXC9P31274 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC7.3□□□□□ -1.24
HOXC9P31274 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC7.3□□□□□ -1.24
HOXC9P31274 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.3□□□□□ -1.24
HOXC9P31274 OR1F2P-201ENST00000570470 933 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 H3F3BP2-201ENST00000583907 357 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 AC060766.1-201ENST00000590824 627 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.3□□□□□ -1.24
HOXC9P31274 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC7.3□□□□□ -1.24
HOXC9P31274 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC7.3□□□□□ -1.24
HOXC9P31274 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.3□□□□□ -1.24
HOXC9P31274 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
HOXC9P31274 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC7.29□□□□□ -1.24
HOXC9P31274 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.29□□□□□ -1.24
HOXC9P31274 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.24
HOXC9P31274 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 RNA5SP305-201ENST00000362665 119 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 AL645733.1-201ENST00000402250 217 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 RBMY2KP-201ENST00000418221 992 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 AC093655.2-201ENST00000425735 631 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 HNRNPA3P4-201ENST00000427514 803 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.29□□□□□ -1.24
HOXC9P31274 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC7.29□□□□□ -1.24
HOXC9P31274 AL390879.1-201ENST00000439143 386 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.29□□□□□ -1.24
HOXC9P31274 CEACAMP7-201ENST00000444105 496 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 AC091685.2-201ENST00000454924 864 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 RN7SL97P-201ENST00000486780 299 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC7.29□□□□□ -1.24
HOXC9P31274 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 SCARNA16.4-201ENST00000516956 187 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 RNA5SP373-201ENST00000517271 95 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.29□□□□□ -1.24
HOXC9P31274 OR5D15P-201ENST00000531671 942 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC7.29□□□□□ -1.24
HOXC9P31274 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC7.29□□□□□ -1.24
HOXC9P31274 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC7.29□□□□□ -1.24
HOXC9P31274 ATP5A1P4-201ENST00000556888 1605 ntBASIC7.29□□□□□ -1.24
HOXC9P31274 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
HOXC9P31274 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.28□□□□□ -1.24
HOXC9P31274 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 OFD1P17-201ENST00000437639 3018 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 RPS26P13-201ENST00000419030 330 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC073850.1-201ENST00000449243 255 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 AL645937.3-201ENST00000453647 936 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 ATP5LP5-201ENST00000483050 299 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 FTH1P8-201ENST00000498161 514 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7.28□□□□□ -1.24
HOXC9P31274 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.28□□□□□ -1.24
HOXC9P31274 AP004607.2-201ENST00000533949 322 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 MIR4436B2-201ENST00000581415 91 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 MIR4436B1-201ENST00000583272 91 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC239803.2-201ENST00000610161 430 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 AC104162.1-201ENST00000430831 2382 ntBASIC7.28□□□□□ -1.24
HOXC9P31274 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.28□□□□□ -1.24
HOXC9P31274 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
HOXC9P31274 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms