Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AKAP3-201ENST00000228850 3339 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
COL8A1P27658 GABRP-201ENST00000265294 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AURKA-206ENST00000395913 2169 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL8A1P27658 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.81□□□□□ -1.32
COL8A1P27658 AC007012.2-201ENST00000623206 1676 ntBASIC6.81□□□□□ -1.32
COL8A1P27658 AC104447.1-201ENST00000624214 2124 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 CNOT4-207ENST00000451834 3507 ntAPPRIS ALT1 TSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 ABLIM1-205ENST00000369266 2230 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 ZNF778-201ENST00000306502 2386 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 GIMAP8-201ENST00000307271 4184 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL8A1P27658 RPL11P4-201ENST00000332269 436 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 RNU6-697P-201ENST00000363348 107 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 RNU6-707P-201ENST00000364647 95 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 SORCS1-203ENST00000369698 2638 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 AL451142.1-201ENST00000375867 775 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 Y_RNA.409-201ENST00000383990 98 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC245036.1-201ENST00000391727 309 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC211486.3-201ENST00000412694 621 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC073136.2-201ENST00000417282 849 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 HMGB3P20-201ENST00000417997 600 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC127537.1-201ENST00000418183 748 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AL358942.1-201ENST00000418595 1178 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 Z82198.3-201ENST00000421145 199 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC6.8□□□□□ -1.32
COL8A1P27658 RPL7P56-201ENST00000429441 717 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 LINC01185-201ENST00000439412 554 ntTSL 4 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC005099.1-201ENST00000442083 610 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 MRPL50P4-201ENST00000446432 475 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.8□□□□□ -1.32
COL8A1P27658 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL8A1P27658 MED28P8-201ENST00000454831 521 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 RN7SL791P-201ENST00000467868 295 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC010301.1-201ENST00000473936 355 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC100843.1-201ENST00000475372 550 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 RNU6-1281P-201ENST00000516223 105 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 Y_RNA.720-201ENST00000517166 92 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 RN7SKP183-201ENST00000517169 324 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC6.8□□□□□ -1.32
COL8A1P27658 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 SUGT1P3-202ENST00000604259 383 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 NUTF2P8-201ENST00000604593 363 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC010200.2-201ENST00000605098 235 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC024560.3-201ENST00000608482 349 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 AC015819.1-201ENST00000613588 663 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 ZRANB2-AS2-220ENST00000623721 1133 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC114546.4-201ENST00000624413 369 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 PWAR5-201ENST00000624480 3180 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 USP48-203ENST00000374732 3037 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 OR8B9P-202ENST00000642028 5216 ntBASIC6.8□□□□□ -1.32
COL8A1P27658 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC6.8□□□□□ -1.32
COL8A1P27658 LUZP1-202ENST00000314174 3715 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 LHFPL3-AS2-202ENST00000631061 1832 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 MIR137HG-205ENST00000634594 3586 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 RRM2-201ENST00000304567 3271 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 NRG3-204ENST00000404576 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 CD46-209ENST00000367047 3089 ntTSL 5 BASIC6.8□□□□□ -1.32
COL8A1P27658 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL8A1P27658 SORBS1-204ENST00000361941 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 BCO2-201ENST00000357685 2930 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL8A1P27658 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC6.8□□□□□ -1.32
COL8A1P27658 PTPRD-204ENST00000397606 5038 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 PTPRD-211ENST00000486161 5039 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 OR7E11P-202ENST00000642027 1491 ntBASIC6.79□□□□□ -1.32
COL8A1P27658 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
COL8A1P27658 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 WDR75-201ENST00000314761 2701 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 SRPK2-214ENST00000489828 2560 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.79□□□□□ -1.32
COL8A1P27658 SORBS1-201ENST00000277982 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 VN2R1P-201ENST00000449668 1743 ntBASIC6.79□□□□□ -1.32
COL8A1P27658 AL136140.2-201ENST00000624717 1705 ntBASIC6.79□□□□□ -1.32
COL8A1P27658 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 AC068044.1-201ENST00000441585 1978 ntBASIC6.79□□□□□ -1.32
COL8A1P27658 KCNJ15-205ENST00000398930 2914 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL8A1P27658 C9orf131-201ENST00000312292 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 GIP-201ENST00000357424 716 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL8A1P27658 Y_RNA.188-201ENST00000363952 111 ntBASIC6.79□□□□□ -1.32
COL8A1P27658 RNU6-1251P-201ENST00000364502 107 ntBASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms