Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DUTP1-201ENST00000493631 470 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 RN7SL591P-201ENST00000496150 292 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.35□□□□□ -1.55
COL5A1P20908 RNU6-941P-201ENST00000516346 108 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.35□□□□□ -1.55
COL5A1P20908 OR4A6P-201ENST00000534364 970 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 MIR4480-201ENST00000582492 71 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 AC006116.3-201ENST00000592968 361 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.35□□□□□ -1.55
COL5A1P20908 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC5.35□□□□□ -1.55
COL5A1P20908 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL5A1P20908 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL5A1P20908 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.35□□□□□ -1.55
COL5A1P20908 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL5A1P20908 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 AL022323.4-201ENST00000623980 13120 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL5A1P20908 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL5A1P20908 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 MEMO1P4-201ENST00000453590 386 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.34□□□□□ -1.55
COL5A1P20908 HMGB1P44-201ENST00000508597 572 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 DPPA3P2-202ENST00000557188 1219 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 AC095055.1-201ENST00000603472 1113 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 FAM25E-202ENST00000608562 189 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 VN1R21P-201ENST00000426703 765 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 RSU1P1-201ENST00000453416 441 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A1P20908 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.34□□□□□ -1.55
COL5A1P20908 AC013701.1-201ENST00000522657 465 ntBASIC5.34□□□□□ -1.55
COL5A1P20908 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A1P20908 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A1P20908 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL5A1P20908 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.34□□□□□ -1.56
COL5A1P20908 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.34□□□□□ -1.56
COL5A1P20908 AC018765.1-201ENST00000623357 3446 ntBASIC5.34□□□□□ -1.56
COL5A1P20908 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.34□□□□□ -1.56
COL5A1P20908 AL021877.2-201ENST00000624442 10684 ntBASIC5.34□□□□□ -1.56
COL5A1P20908 AC114947.2-201ENST00000565748 2125 ntBASIC5.34□□□□□ -1.56
COL5A1P20908 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
COL5A1P20908 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A1P20908 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A1P20908 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
COL5A1P20908 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
COL5A1P20908 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A1P20908 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL5A1P20908 RN7SKP6-201ENST00000364795 319 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.33□□□□□ -1.56
COL5A1P20908 SNORA16A-201ENST00000384342 137 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.33□□□□□ -1.56
COL5A1P20908 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A1P20908 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.33□□□□□ -1.56
COL5A1P20908 AC009963.2-201ENST00000453431 138 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 AL356981.1-201ENST00000454879 684 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.33□□□□□ -1.56
COL5A1P20908 RN7SL738P-201ENST00000470264 297 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 STRADBP1-201ENST00000478954 1281 ntBASIC5.33□□□□□ -1.56
COL5A1P20908 AC020937.1-201ENST00000519677 1013 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms