Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 MIR3189-201ENST00000578735 73 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC027229.1-201ENST00000583887 253 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AL355802.4-201ENST00000607635 548 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC097460.3-201ENST00000623099 442 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 LINC00216-201ENST00000623548 1126 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 METTL15-211ENST00000634762 718 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 TMEM30CP-203ENST00000637814 1035 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC018717.1-201ENST00000457712 1505 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AC016745.2-201ENST00000608834 3443 ntBASIC6.24□□□□□ -1.41
DKK3Q9UBP4 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.24□□□□□ -1.41
DKK3Q9UBP4 AL591848.4-201ENST00000567832 3472 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 SNORA43.1-201ENST00000364863 140 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 SNORA51.9-201ENST00000384295 124 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AL356057.1-202ENST00000402263 756 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 RN7SKP161-201ENST00000411110 305 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC234781.4-201ENST00000419384 244 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 TPTE2P3-201ENST00000441562 1189 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 GAPDHP23-201ENST00000444823 993 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 HMGN1P5-201ENST00000448591 263 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC002553.3-201ENST00000453002 341 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 NDUFA5P5-201ENST00000468361 342 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 RBBP4P1-201ENST00000502424 1276 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 CKS1BP1-201ENST00000555221 240 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC007346.1-201ENST00000569208 867 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 NPIPB1P-202ENST00000588786 828 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AL450270.1-201ENST00000606160 391 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC092681.3-201ENST00000609463 678 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC097478.2-201ENST00000610572 514 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC092266.1-201ENST00000610958 165 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC018926.1-201ENST00000616335 435 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC074276.2-201ENST00000619891 348 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC025262.3-201ENST00000623666 360 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 AC092692.1-201ENST00000623625 2595 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 EIF3EP1-201ENST00000433978 1316 ntBASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
DKK3Q9UBP4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC6.22□□□□□ -1.41
DKK3Q9UBP4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
DKK3Q9UBP4 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms