Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC090695.1-201ENST00000561269 1222 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 CYP2C60P-201ENST00000566088 139 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ATP5F1P7-201ENST00000567330 760 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MIR4732-201ENST00000581873 76 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL020997.3-201ENST00000602843 359 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL139344.1-201ENST00000605228 195 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MIR6813-201ENST00000621638 56 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC068213.1-201ENST00000625124 226 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 Z95114.1-201ENST00000624264 14574 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 CLCA3P-203ENST00000490028 2781 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC006213.6-201ENST00000623722 4179 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 TTC41P-205ENST00000551270 3963 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 RNU6-549P-201ENST00000384433 107 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 RNU6-1263P-201ENST00000384601 106 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 RPL7P58-201ENST00000402913 758 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 RPL12P23-201ENST00000405880 490 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC105402.1-201ENST00000413336 545 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 Z82198.3-201ENST00000421145 199 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 GAPDHP37-201ENST00000442317 968 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 RPL23AP44-201ENST00000482216 473 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC027369.2-201ENST00000528030 440 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC244502.2-201ENST00000543361 851 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 ZNF92P3-201ENST00000596594 954 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC021749.1-201ENST00000604322 607 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC005252.1-201ENST00000604518 1063 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC080013.6-201ENST00000606185 215 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC016877.3-201ENST00000606778 504 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC013468.1-201ENST00000608680 598 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC005277.2-201ENST00000617898 390 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 OR7A1P-202ENST00000641542 1158 ntBASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
TRIM39Q9HCM9 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 SNX18P3-202ENST00000565670 1750 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AC217777.1-201ENST00000570034 1471 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 AL136531.3-201ENST00000624378 3658 ntBASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 METTL5-202ENST00000308099 629 ntTSL 3 BASIC6.54□□□□□ -1.36
TRIM39Q9HCM9 FUNDC2P3-201ENST00000334716 533 ntBASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms