Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 GAPDHP71-201ENST00000511530 1003 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 HMGN2P36-201ENST00000529541 409 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC009268.1-201ENST00000561352 1203 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC090651.1-201ENST00000567865 634 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AP003117.1-201ENST00000602771 554 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AL357094.1-201ENST00000603845 844 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AL589674.2-201ENST00000604304 337 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 BNIP3P7-201ENST00000605641 516 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AC018754.1-201ENST00000607486 925 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 uc_338.26-201ENST00000612659 160 ntBASIC6.12□□□□□ -1.43
EBF3Q9H4W6 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
EBF3Q9H4W6 AOX3P-204ENST00000491025 2107 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 KYNUP3-201ENST00000574386 1341 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 RNA5SP394-201ENST00000364216 119 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 MIR143-201ENST00000385300 106 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 SNORA81-201ENST00000408493 178 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 OR3A2-201ENST00000408891 1076 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC002504.1-201ENST00000438281 691 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AL390879.1-201ENST00000439143 386 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC093166.4-201ENST00000457867 318 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 RN7SL352P-201ENST00000466002 277 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 EIF3LP3-201ENST00000495197 822 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 NENFP3-201ENST00000503735 313 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC147055.1-201ENST00000509261 750 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 IGLV3-30-201ENST00000524362 298 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 NPM1P5-201ENST00000557228 838 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC119403.2-201ENST00000590960 598 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC104695.2-201ENST00000605056 775 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC063952.1-203ENST00000634410 658 ntBASIC6.11□□□□□ -1.43
EBF3Q9H4W6 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.11□□□□□ -1.43
EBF3Q9H4W6 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC018628.1-201ENST00000624147 3819 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 RNA5-8SP5-201ENST00000365304 152 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 RN7SKP278-201ENST00000410504 342 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 OR2AT2P-201ENST00000413438 905 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 BMS1P13-201ENST00000417301 885 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AK4P4-201ENST00000419465 646 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC6.1□□□□□ -1.43
EBF3Q9H4W6 OR5W1P-201ENST00000423705 938 ntBASIC6.1□□□□□ -1.43
EBF3Q9H4W6 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms