Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC096996.1-201ENST00000563813 325 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC019322.1-201ENST00000571869 389 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AP001496.3-201ENST00000580230 913 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AP005431.1-201ENST00000618479 319 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AL353684.1-201ENST00000622677 1120 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AP001962.1-201ENST00000624114 559 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VPS35Q96QK1 AC091305.2-201ENST00000624049 1576 ntBASIC5.72□□□□□ -1.49
VPS35Q96QK1 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.72□□□□□ -1.49
VPS35Q96QK1 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
VPS35Q96QK1 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.71□□□□□ -1.49
VPS35Q96QK1 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 CASC19-255ENST00000641733 1385 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 RN7SKP292-201ENST00000365522 317 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 RN7SKP279-201ENST00000411383 298 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC093155.2-201ENST00000420734 937 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL354766.1-201ENST00000423396 542 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 MTND6P12-201ENST00000428247 522 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 GAPDHP48-201ENST00000436626 961 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 KRT8P51-201ENST00000438938 274 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC073109.1-201ENST00000445066 978 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 RPL12P24-201ENST00000474907 486 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 RPS3AP15-201ENST00000483874 781 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC009120.1-201ENST00000493458 473 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 SCARNA6.1-201ENST00000516989 238 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 RN7SKP5-201ENST00000517045 272 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC022826.1-201ENST00000519383 805 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 NPM1P42-201ENST00000560329 862 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC015802.2-201ENST00000589690 189 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AL133481.2-203ENST00000607558 139 ntBASIC5.71□□□□□ -1.5
VPS35Q96QK1 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VPS35Q96QK1 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.71□□□□□ -1.5
VPS35Q96QK1 AP004607.3-201ENST00000530354 3915 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AC093849.1-201ENST00000563631 2209 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VPS35Q96QK1 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 AL159987.1-201ENST00000347911 293 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 RNA5SP510-201ENST00000364697 99 ntBASIC5.7□□□□□ -1.5
VPS35Q96QK1 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
VPS35Q96QK1 RPL11P3-201ENST00000395256 523 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms