Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 AC005972.3-201ENST00000606304 481 ntBASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL28A1Q2UY09 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC105235.1-201ENST00000623208 1816 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC011369.2-201ENST00000624423 1567 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC125238.2-201ENST00000430003 1440 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SNORD16-201ENST00000362803 99 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 RNU1-59P-201ENST00000364829 162 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 RNU6-152P-201ENST00000384037 107 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AL645927.1-201ENST00000396783 406 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 RN7SKP59-201ENST00000410520 314 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC013470.3-201ENST00000420252 1194 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC093155.2-201ENST00000420734 937 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 ARAFP1-201ENST00000422172 605 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MRPS33P4-201ENST00000434892 317 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MTND4P15-201ENST00000437913 1033 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AL772161.1-201ENST00000439130 476 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 TXNP2-201ENST00000443918 295 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SNRPCP3-201ENST00000474888 476 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC138409.2-202ENST00000507274 458 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SETP21-201ENST00000514799 892 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MIR4505-201ENST00000582238 73 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 U1.25-201ENST00000614085 162 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 U1.34-201ENST00000618578 162 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 U1.31-201ENST00000620022 160 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AL136228.1-201ENST00000622221 319 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 AP000550.3-201ENST00000637734 379 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 NCOA4P2-201ENST00000340589 1813 ntBASIC5.85□□□□□ -1.47
COL28A1Q2UY09 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
COL28A1Q2UY09 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms