Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC7.82□□□□□ -1.16
MSH6P52701 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7.82□□□□□ -1.16
MSH6P52701 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
MSH6P52701 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC7.82□□□□□ -1.16
MSH6P52701 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC7.82□□□□□ -1.16
MSH6P52701 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC7.82□□□□□ -1.16
MSH6P52701 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.82□□□□□ -1.16
MSH6P52701 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.81□□□□□ -1.16
MSH6P52701 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSH6P52701 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
MSH6P52701 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSH6P52701 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
MSH6P52701 SNORA51.8-201ENST00000384234 132 ntBASIC7.81□□□□□ -1.16
MSH6P52701 MIR130A-201ENST00000385274 89 ntBASIC7.81□□□□□ -1.16
MSH6P52701 AC015977.1-201ENST00000418887 292 ntBASIC7.81□□□□□ -1.16
MSH6P52701 C4BPAP2-201ENST00000428434 478 ntBASIC7.81□□□□□ -1.16
MSH6P52701 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC7.81□□□□□ -1.16
MSH6P52701 AC004129.2-201ENST00000457229 287 ntBASIC7.81□□□□□ -1.16
MSH6P52701 RNU1-88P-201ENST00000459274 128 ntBASIC7.81□□□□□ -1.16
MSH6P52701 IGLV2-34-201ENST00000490007 283 ntBASIC7.81□□□□□ -1.16
MSH6P52701 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC7.81□□□□□ -1.16
MSH6P52701 AC015864.1-201ENST00000496512 544 ntBASIC7.81□□□□□ -1.16
MSH6P52701 RNU6-941P-201ENST00000516346 108 ntBASIC7.81□□□□□ -1.16
MSH6P52701 HMGB1P40-201ENST00000525121 540 ntBASIC7.81□□□□□ -1.16
MSH6P52701 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC7.81□□□□□ -1.16
MSH6P52701 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 AC027334.1-201ENST00000603257 310 ntBASIC7.81□□□□□ -1.16
MSH6P52701 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC7.81□□□□□ -1.16
MSH6P52701 AC025574.2-201ENST00000615621 514 ntBASIC7.81□□□□□ -1.16
MSH6P52701 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 HSPA8P14-201ENST00000552265 1805 ntBASIC7.81□□□□□ -1.16
MSH6P52701 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSH6P52701 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC7.81□□□□□ -1.16
MSH6P52701 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
MSH6P52701 SNORD8-201ENST00000363915 110 ntBASIC7.8□□□□□ -1.16
MSH6P52701 MIR551A-201ENST00000385042 96 ntBASIC7.8□□□□□ -1.16
MSH6P52701 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 CHMP1B2P-201ENST00000399581 597 ntBASIC7.8□□□□□ -1.16
MSH6P52701 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC7.8□□□□□ -1.16
MSH6P52701 RPS4XP9-201ENST00000405151 780 ntBASIC7.8□□□□□ -1.16
MSH6P52701 DNAJA1P4-201ENST00000406473 1166 ntBASIC7.8□□□□□ -1.16
MSH6P52701 TMA16P2-201ENST00000413187 601 ntBASIC7.8□□□□□ -1.16
MSH6P52701 USP9YP9-201ENST00000429406 715 ntBASIC7.8□□□□□ -1.16
MSH6P52701 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 NDUFA5P9-201ENST00000472609 340 ntBASIC7.8□□□□□ -1.16
MSH6P52701 RN7SL481P-201ENST00000477764 299 ntBASIC7.8□□□□□ -1.16
MSH6P52701 MIR2117-201ENST00000516780 80 ntBASIC7.8□□□□□ -1.16
MSH6P52701 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.8□□□□□ -1.16
MSH6P52701 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC7.8□□□□□ -1.16
MSH6P52701 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.8□□□□□ -1.16
MSH6P52701 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC7.8□□□□□ -1.16
MSH6P52701 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC7.8□□□□□ -1.16
MSH6P52701 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSH6P52701 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC7.8□□□□□ -1.16
MSH6P52701 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
MSH6P52701 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 SNORA17.1-201ENST00000362945 126 ntBASIC7.79□□□□□ -1.16
MSH6P52701 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 RNU1-149P-201ENST00000390870 161 ntBASIC7.79□□□□□ -1.16
MSH6P52701 AC068138.1-201ENST00000412635 217 ntBASIC7.79□□□□□ -1.16
MSH6P52701 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC7.79□□□□□ -1.16
MSH6P52701 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC7.79□□□□□ -1.16
MSH6P52701 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
MSH6P52701 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC7.79□□□□□ -1.16
MSH6P52701 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC7.79□□□□□ -1.16
MSH6P52701 AC073869.10-201ENST00000642016 354 ntBASIC7.79□□□□□ -1.16
MSH6P52701 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSH6P52701 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms