Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A1P20908 USP24P1-201ENST00000433802 779 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 AL672138.1-201ENST00000450604 1015 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AC092905.1-201ENST00000467527 949 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 RPS29P22-201ENST00000472363 168 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 RN7SL817P-201ENST00000480777 288 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AC083982.1-201ENST00000485679 344 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 IGLV2-34-201ENST00000490007 283 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 RN7SKP99-201ENST00000517028 307 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL5A1P20908 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A1P20908 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL5A1P20908 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A1P20908 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC5.37□□□□□ -1.55
COL5A1P20908 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A1P20908 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 RNA5SP87-201ENST00000384155 118 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AC013442.1-201ENST00000397347 228 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AL356967.1-201ENST00000406305 431 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 FAM96AP1-201ENST00000430879 482 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AL365220.1-201ENST00000432923 399 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 TOMM22P4-201ENST00000511318 336 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.37□□□□□ -1.55
COL5A1P20908 MIR2117-201ENST00000516780 80 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC024940.3-201ENST00000538551 316 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 OR11J2P-201ENST00000555298 907 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A1P20908 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.37□□□□□ -1.55
COL5A1P20908 CYP4F35P-202ENST00000636121 390 ntBASIC5.37□□□□□ -1.55
COL5A1P20908 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A1P20908 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL5A1P20908 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 AC131971.1-201ENST00000332881 1482 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 AC093829.1-201ENST00000506662 1618 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A1P20908 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 CYB5AP4-201ENST00000396692 399 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A1P20908 AC109462.1-201ENST00000491087 368 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.36□□□□□ -1.55
COL5A1P20908 AC079075.1-201ENST00000559543 878 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A1P20908 AC090607.5-201ENST00000615692 224 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 AC009704.2-201ENST00000618739 483 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A1P20908 MAPK10-350ENST00000641777 965 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A1P20908 AL033543.1-201ENST00000623440 13454 ntBASIC5.36□□□□□ -1.55
COL5A1P20908 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A1P20908 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.35□□□□□ -1.55
COL5A1P20908 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 AC092724.1-201ENST00000624623 3397 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.35□□□□□ -1.55
COL5A1P20908 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A1P20908 AL121886.1-201ENST00000358609 435 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 SNORA67-201ENST00000384423 137 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 RNU1-149P-201ENST00000390870 161 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 RNU4-64P-201ENST00000410795 131 ntBASIC5.35□□□□□ -1.55
COL5A1P20908 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.35□□□□□ -1.55
COL5A1P20908 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL5A1P20908 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms