Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC027279.1-201ENST00000568885 4284 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC020656.2-201ENST00000613291 5309 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 GAPDHP42-201ENST00000406848 981 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 RN7SKP206-201ENST00000410823 293 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 OR6C71P-201ENST00000432580 913 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 TMEM183AP1-205ENST00000432739 290 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 NANOGP9-201ENST00000439890 892 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC019185.1-201ENST00000442718 389 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 LDHBP2-201ENST00000456969 1005 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 snoU13.29-201ENST00000459370 104 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 RNU7-157P-201ENST00000459600 66 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 RNA5SP362-201ENST00000516048 118 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 RN7SKP253-201ENST00000516424 309 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 RBM22P12-201ENST00000567098 1255 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC011445.2-201ENST00000599274 173 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 MIR6862-1-201ENST00000613016 70 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 MIR6862-2-201ENST00000614755 70 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 AC120036.2-201ENST00000509729 1474 ntBASIC5.68□□□□□ -1.5
LHX3Q9UBR4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC5.68□□□□□ -1.5
LHX3Q9UBR4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC027279.4-201ENST00000624371 2072 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC090220.1-201ENST00000593078 1699 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL121886.1-201ENST00000358609 435 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 RNU6-316P-201ENST00000391027 107 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL391422.1-201ENST00000402155 436 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 RNF10P1-201ENST00000418589 369 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 OR6D1P-201ENST00000436165 939 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL390119.1-201ENST00000440329 312 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 CYCSP51-201ENST00000443545 318 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL596266.1-201ENST00000448132 400 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 PPIAP20-201ENST00000449839 135 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 RN7SL466P-201ENST00000497546 295 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 RPS17P5-201ENST00000498293 408 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.67□□□□□ -1.5
LHX3Q9UBR4 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
LHX3Q9UBR4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 HSPD1P7-201ENST00000447985 1686 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC068870.1-201ENST00000563737 2455 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms