Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GAPDHP33-201ENST00000443168 1013 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL031681.1-201ENST00000443304 400 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 MTCYBP42-201ENST00000444653 1130 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 TVP23CP1-201ENST00000450317 639 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 HNRNPDLP3-201ENST00000456745 380 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC005017.1-201ENST00000482002 490 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 NACAP5-201ENST00000509863 636 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC114477.1-201ENST00000605097 605 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL390877.1-201ENST00000605704 214 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL445423.1-201ENST00000609941 536 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 TUSC7.1-201ENST00000610969 165 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 FRG1HP-204ENST00000617940 757 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL354718.1-201ENST00000619764 589 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC011815.3-201ENST00000624194 473 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 MAPK10-261ENST00000641050 3109 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 MAPK10-357ENST00000641831 2858 ntBASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC6.57□□□□□ -1.36
TRIM39Q9HCM9 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC010168.2-201ENST00000562691 5428 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC007485.2-201ENST00000623493 1667 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 METTL21EP-201ENST00000298105 713 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL033519.1-201ENST00000407266 307 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 RANP6-201ENST00000413691 644 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MTND4LP17-201ENST00000414607 293 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MTND2P18-201ENST00000419962 1030 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 GAPDHP19-201ENST00000431768 1005 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 COL11A2P1-205ENST00000441798 676 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 PTENP1-201ENST00000447117 1215 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 RNF148-202ENST00000447240 839 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 BZW1P1-201ENST00000454901 1240 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC010486.2-201ENST00000505572 483 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 SETP1-201ENST00000556014 845 ntBASIC6.56□□□□□ -1.36
TRIM39Q9HCM9 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms