Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 IGBP1P1-201ENST00000554337 1009 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 TXNP4-201ENST00000575018 310 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 SDR42E1P1-201ENST00000611327 477 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AL445670.1-201ENST00000618889 801 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 OR11H2-202ENST00000641517 1085 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 AC123769.1-201ENST00000530992 3192 ntBASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC3Q9BQI4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 RNA5SP251-201ENST00000410614 137 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 DEFA9P-201ENST00000433042 285 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AL445687.2-201ENST00000458156 728 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 PFN1P6-201ENST00000476786 399 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 SIAH1P1-201ENST00000479411 923 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AC112184.1-201ENST00000505179 312 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 RNU6-615P-201ENST00000516065 106 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 RN7SKP288-201ENST00000516227 268 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GTF2IP11-201ENST00000526931 420 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 HMGB1P42-201ENST00000532126 553 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AL049872.1-201ENST00000556323 322 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GARSP1-201ENST00000570895 719 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 MIR1273E-201ENST00000581165 102 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 MIR4260-201ENST00000583107 67 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 OR7E18P-201ENST00000592589 702 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC3Q9BQI4 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC120036.2-201ENST00000509729 1474 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL355433.1-201ENST00000422804 300 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 TNPO1P1-201ENST00000423641 1138 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 HMGB1P32-201ENST00000425971 565 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL022331.1-201ENST00000429025 477 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AL663074.2-201ENST00000440621 479 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 RPS17P15-201ENST00000475609 349 ntBASIC5.66□□□□□ -1.5
CCDC3Q9BQI4 AC147055.1-201ENST00000509261 750 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms